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use version 2.0.0 docker image
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tasks/wdl/ImputationBeagleTasks.wdl

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@@ -307,7 +307,7 @@ task Phase {
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Int start
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Int end
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String beagle_docker = "us.gcr.io/broad-dsde-methods/sshah/beagle_jar_test:d820c4e_version_1"
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String beagle_docker = "us.gcr.io/broad-gotc-prod/imputation-beagle:2.0.0-d820c4e-1763720636"
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Int cpu = 8 # This parameter is used as the nthreads input to Beagle which is part of how we make it determinstic. Changing this value may change the output generated by the tool
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Int memory_mb = 32000 # value depends on chunk size, the number of samples in ref and target panel
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Int disk_size_gb = ceil((3 * size(dataset_vcf, "GiB")) + size(ref_panel_bref3, "GiB")) + 10
@@ -356,7 +356,7 @@ task Impute {
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Int end
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Boolean impute_with_allele_probabilities
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String beagle_docker = "us.gcr.io/broad-dsde-methods/sshah/beagle_jar_test:d820c4e_version_1"
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String beagle_docker = "us.gcr.io/broad-gotc-prod/imputation-beagle:2.0.0-d820c4e-1763720636"
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Int cpu = 8 # This parameter is used as the nthreads input to Beagle which is part of how we make it determinstic. Changing this value may change the output generated by the tool
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Int memory_mb = 32000 # value depends on chunk size, the number of samples in ref and target panel
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Int disk_size_gb = ceil((3 * size(dataset_vcf, "GiB")) + size(ref_panel_bref3, "GiB")) + 10

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