v2.0.21.1

• update viral-core to v2.0.21 [#13]
• remove mvicuna deduplication from taxon_filter.deplete [#14, #8]

v2.0.20.2

PR #11 changes to metagenomics.krona

• do not override root name after all (causes trouble on merging krona plots later)
• add a --sample_name optional parameter to override the "dataset" name. This is the name that shows in the title of the web tab and is used to identify datasets in a multi-plot html file. If not specified it defaults to basename(inputfile).

v2.0.20.1

PR #10 which includes:

• update viral-core to 2.0.20.1
• pass the filename base name to krona as a "dataset name" and "root name". This embeds the sample's name in the krona html which gets picked up in later merge operations to distinguish which plots correspond to which sample in a multi-sample html file.
• reenable some integration tests that were accidentally being skipped

v2.0.16.0

Update viral-core

v2.0.15.0

Update viral-core

v2.0.14.0

• update to viral-core 2.0.14, bugfixes and improvements to compressed file handling
• initial (not working quite yet) doc builds
• improved DEVELOPMENT_NOTES

v2.0.11.1

Add GNU parallel conda package.

v2.0.11.0

Update upstream with bug fixes, reincarnate kraken1 (non uniq)

v2.0.8.1

Actually bump viral-core to 2.0.8

v2.0.8.0

Bump viral-core to v2.0.8 to incorporate upstream bugfixes in python code.