Merge pull request #41 from broadinstitute/ct-update-test-config

update docker base image to v2.2.3 of viral-core; Update conftest.py to account for breaking changes in the newer version of pytest

Author: tomkinsc

Dockerfile

@@ -1,4 +1,4 @@
-FROM quay.io/broadinstitute/viral-core:2.2.1
+FROM quay.io/broadinstitute/viral-core:2.2.3
 
 LABEL maintainer "[email protected]"
 

conftest.py

@@ -166,13 +166,13 @@ def pytest_terminal_summary(self, terminalreporter, exitstatus):
         if self.durations is None:
             return
 
-        writer = terminalreporter.writer
+        writer = terminalreporter
 
         slowest = sorted(self.stats.items(), key=operator.itemgetter(1), reverse=True)
         if not self.durations:
-            writer.sep("=", "slowest fixture durations")
+            writer.write_sep("=", "slowest fixture durations")
         else:
-            writer.sep("=", "slowest %s fixture durations" % self.durations)
+            writer.write_sep("=", "slowest %s fixture durations" % self.durations)
             slowest = slowest[:self.durations]