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eweitzeweitz
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Merge pull request #121 from broadinstitute/ew-10X-to-10x
Update "10X" to "10x" per EFO change (SCP-3290)
2 parents 331c2d4 + db0bbed commit 31da456

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‎demo_data/mc_compliant_metadata_example.tsv‎

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NAME biosample_id donor_id species species__ontology_label sex cell_type cell_type__ontology_label average_intensity disease disease__ontology_label organ organ__ontology_label library_preparation_protocol library_preparation_protocol__ontology_label
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TYPE group group group group group group group numeric group group group group group group
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CELL_0001 mm1_lymph mouse1 NCBITaxon_10090 Mus musculus male CL_0000084 T cell 7.742 MONDO_0005062 lymphoma UBERON_0000029 lymph node EFO_0009899 10X 3' v2 sequencing
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CELL_0002 mm1_lymph mouse1 NCBITaxon_10090 Mus musculus male CL_0000625 CD8-positive, alpha-beta T cell -13.745 MONDO_0005062 lymphoma UBERON_0000029 lymph node EFO_0009899 10X 3' v2 sequencing
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CELL_0003 hu1_blood human1 NCBITaxon_9606 Homo sapiens female CL_0000235 macrophage -2.116 PATO_0000461 normal UBERON_0000178 blood EFO_0009899 10X 3' v2 sequencing
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CELL_0004 hu1_blood human1 NCBITaxon_9606 Homo sapiens female CL_0000084 T cell 0.638 PATO_0000461 normal UBERON_0000178 blood EFO_0009899 10X 3' v2 sequencing
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CELL_0005 mm1_blood mouse1 NCBITaxon_10090 Mus musculus male CL_0000084 T cell 9.188 MONDO_0005062 lymphoma UBERON_0000178 blood EFO_0009899 10X 3' v2 sequencing
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CELL_0006 mm1_blood mouse1 NCBITaxon_10090 Mus musculus male CL_0000786 plasma cell -4.125 MONDO_0005062 lymphoma UBERON_0000178 blood EFO_0009899 10X 3' v2 sequencing
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CELL_0007 mm2_blood mouse2 NCBITaxon_10090 Mus musculus male CL_0000094 granulocyte -12.606 PATO_0000461 normal UBERON_0000178 blood EFO_0009899 10X 3' v2 sequencing
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CELL_0008 mm2_blood mouse2 NCBITaxon_10090 Mus musculus male CL_0000576 monocyte 3.675 PATO_0000461 normal UBERON_0000178 blood EFO_0009899 10X 3' v2 sequencing
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CELL_0009 hu2_blood human2 NCBITaxon_9606 Homo sapiens male CL_0000576 monocyte -2.27 PATO_0000461 normal UBERON_0000178 blood EFO_0009899 10X 3' v2 sequencing
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CELL_0010 hu2_blood human2 NCBITaxon_9606 Homo sapiens male CL_0000084 T cell -2.606 PATO_0000461 normal UBERON_0000178 blood EFO_0009899 10X 3' v2 sequencing
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CELL_0001 mm1_lymph mouse1 NCBITaxon_10090 Mus musculus male CL_0000084 T cell 7.742 MONDO_0005062 lymphoma UBERON_0000029 lymph node EFO_0009899 10x3' v2 sequencing
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CELL_0002 mm1_lymph mouse1 NCBITaxon_10090 Mus musculus male CL_0000625 CD8-positive, alpha-beta T cell -13.745 MONDO_0005062 lymphoma UBERON_0000029 lymph node EFO_0009899 10x3' v2 sequencing
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CELL_0003 hu1_blood human1 NCBITaxon_9606 Homo sapiens female CL_0000235 macrophage -2.116 PATO_0000461 normal UBERON_0000178 blood EFO_0009899 10x3' v2 sequencing
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CELL_0004 hu1_blood human1 NCBITaxon_9606 Homo sapiens female CL_0000084 T cell 0.638 PATO_0000461 normal UBERON_0000178 blood EFO_0009899 10x3' v2 sequencing
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CELL_0005 mm1_blood mouse1 NCBITaxon_10090 Mus musculus male CL_0000084 T cell 9.188 MONDO_0005062 lymphoma UBERON_0000178 blood EFO_0009899 10x3' v2 sequencing
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CELL_0006 mm1_blood mouse1 NCBITaxon_10090 Mus musculus male CL_0000786 plasma cell -4.125 MONDO_0005062 lymphoma UBERON_0000178 blood EFO_0009899 10x3' v2 sequencing
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CELL_0007 mm2_blood mouse2 NCBITaxon_10090 Mus musculus male CL_0000094 granulocyte -12.606 PATO_0000461 normal UBERON_0000178 blood EFO_0009899 10x3' v2 sequencing
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CELL_0008 mm2_blood mouse2 NCBITaxon_10090 Mus musculus male CL_0000576 monocyte 3.675 PATO_0000461 normal UBERON_0000178 blood EFO_0009899 10x3' v2 sequencing
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CELL_0009 hu2_blood human2 NCBITaxon_9606 Homo sapiens male CL_0000576 monocyte -2.27 PATO_0000461 normal UBERON_0000178 blood EFO_0009899 10x3' v2 sequencing
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CELL_0010 hu2_blood human2 NCBITaxon_9606 Homo sapiens male CL_0000084 T cell -2.606 PATO_0000461 normal UBERON_0000178 blood EFO_0009899 10x3' v2 sequencing

‎site_figures/metadata_file/mc_compliant_metadata_image_full.jpg‎

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