clinvar xml release (#5050)

bpblanken · web-flow · commit bb5acd9ebd57 · 2025-09-29T16:20:33.000-04:00
diff --git a/seqr/management/commands/reload_clinvar_all_variants.py b/seqr/management/commands/reload_clinvar_all_variants.py
@@ -52,7 +52,7 @@ def replace_spaces_with_underscores(value: Union[str, list[str], list[tuple[str,
     'practice guideline': 4,
 }
 WEEKLY_XML_RELEASE = (
-    'https://ftp.ncbi.nlm.nih.gov/pub/clinvar/xml/ClinVarVCVRelease_00-latest.xml.gz'
+    'https://ftp.ncbi.nlm.nih.gov/pub/clinvar/xml/weekly_release/ClinVarVCVRelease_00-latest_weekly.xml.gz'
 )
 
 def clinvar_run_sql(sql: str):

Original file line number	Diff line number	Diff line change
`@@ -52,7 +52,7 @@ def replace_spaces_with_underscores(value: Union[str, list[str], list[tuple[str,`
`52`	`52`	`'practice guideline': 4,`
`53`	`53`	`}`
`54`	`54`	`WEEKLY_XML_RELEASE = (`
`55`		`- 'https://ftp.ncbi.nlm.nih.gov/pub/clinvar/xml/ClinVarVCVRelease_00-latest.xml.gz'`
	`55`	`+ 'https://ftp.ncbi.nlm.nih.gov/pub/clinvar/xml/weekly_release/ClinVarVCVRelease_00-latest_weekly.xml.gz'`
`56`	`56`	`)`
`57`	`57`
`58`	`58`	`def clinvar_run_sql(sql: str):`