Merge pull request #5016 from broadinstitute/python-3-11-compatibility

run unit tests on updated python version

Author: hanars

.github/workflows/unit-tests.yml

@@ -21,7 +21,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: [3.9]
+        python-version: [3.9, 3.11]
 
     services:
       # Label used to access the service container

requirements-dev.in

@@ -1,5 +1,5 @@
 -c requirements.txt # use the generated reqs as a constraint
-coverage<5.2
+coverage<6.6
 django-compressor
 django-debug-toolbar      # https://github.com/jazzband/django-debug-toolbar
 mock                      # mock objects for unit tests

requirements-dev.txt

@@ -20,7 +20,7 @@ charset-normalizer==3.0.1
     #   requests
 click==8.1.3
     # via pip-tools
-coverage==5.1
+coverage==6.5
     # via -r requirements-dev.in
 django==4.2.24
     # via

seqr/utils/search/elasticsearch/es_utils_tests.py

@@ -39,6 +39,11 @@ def replace_json(self, url, *args, **kwargs):
     def call_request_json(self, index=-1):
         return json.loads(self.calls[index].request.body)
 
+    def activate(self, func):
+        def wrapper(*args, **kwargs):
+            with self:
+                return func(*args, **kwargs)
+        return wrapper
 
 urllib3_responses = Urllib3Responses()