Merge pull request #5047 from broadinstitute/set-variant-key-sv-cleanup

clean up sv id mapping for set key

Author: hanars

.github/workflows/unit-tests.yml

@@ -41,7 +41,7 @@ jobs:
           # Maps tcp port 5432 on service container to the host
           - 5432:5432
       clickhouse:
-        image: bitnami/clickhouse:latest
+        image: bitnamilegacy/clickhouse:latest
         ports:
           - 9000:9000   # Native client interface
         volumes:

clickhouse_search/fixtures/clickhouse_saved_variants.json

@@ -213,7 +213,7 @@
     "pk": 101,
     "fields": {
       "key": 101,
-      "variant_id": "suffix_19107_DEL"
+      "variant_id": "suffix_19107_DEL_013746"
     }
 }, {
     "model": "clickhouse_search.annotationssv",
@@ -225,7 +225,7 @@
       "end_chrom": null,
       "pos": 249045487,
       "end": 249045898,
-      "variant_id": "suffix_19107_DEL",
+      "variant_id": "suffix_19107_DEL_013746",
       "lifted_over_chrom": null,
       "lifted_over_pos": null,
       "rg37_locus_end": [null, null],
@@ -250,7 +250,7 @@
     "pk": 111,
     "fields": {
       "key": 111,
-      "variant_id": "prefix_70191_DEL"
+      "variant_id": "prefix_19107_DEL"
     }
 }, {
     "model": "clickhouse_search.annotationsgcnv",
@@ -261,7 +261,7 @@
       "chrom": "1",
       "pos": 249045487,
       "end": 249045898,
-      "variant_id": "prefix_70191_DEL",
+      "variant_id": "prefix_19107_DEL",
       "lifted_over_chrom": "2",
       "lifted_over_pos": null,
       "rg37_locus_end": [null, null],