comment out branch trigger in minify_ontologies.yml

fix error in uniquefied name splitting

Author: jlchang

.github/workflows/minify_ontologies.yml

@@ -3,9 +3,9 @@ name: Minify ontologies
 on:
   pull_request:
     types: [opened]  # Only trigger on PR "opened" event
-  push: # Uncomment, update branches to develop / debug
-    branches:
-      jlc_show_gene_name 
+#  push: # Uncomment, update branches to develop / debug
+#    branches:
+#      jlc_show_gene_name 
 
 jobs:
   build:

ingest/de.py

@@ -309,8 +309,9 @@ def delimiter_in_gene_name(rank):
     @staticmethod
     def extract_gene_id_for_out_file(rank):
         """Separate out gene name from gene ID"""
-        rank['names'] = rank['names'].str.split('|').str[0]
         rank['feature_id'] = rank['names'].str.split('|').str[1]
+        rank['names'] = rank['names'].str.split('|').str[0]
+
         return rank
 
     @staticmethod

tests/data/differential_expression/sparse/reference/de_sparse_dup_gene--cell_type__ontology_label--endothelial_cell--study--wilcoxon.tsv

@@ -1,3 +1,3 @@
 	names	scores	logfoldchanges	pvals	pvals_adj	pct_nz_group	pct_nz_reference	feature_id
-0	Sox17	41.46	11.63	0	0	0.4833	0.002793	
-1	Sox17	-5.059	-0.8853	4.225e-07	4.225e-07	0.1514	0.1939	
+0	Sox17	41.46	11.63	0	0	0.4833	0.002793	ENSMUST00000027035
+1	Sox17	-5.059	-0.8853	4.225e-07	4.225e-07	0.1514	0.1939	ENSMUST00000195555

tests/test_de.py

@@ -375,7 +375,7 @@ def test_de_process_sparse(self):
         self.assertIn('feature_id', content.columns, "Expected feature_id output not found.")
 
         # md5 checksum calculated using reference file in tests/data/differential_expression/sparse/reference
-        expected_checksum = "2129b3f6f0c7ee56ab2b6a74948c46a7"
+        expected_checksum = "7b13cb24b020aca268015e714ca2d666"
 
         # running DifferentialExpression via pytest results in output files in the tests dir
         with open(expected_file_path, "rb") as f: