Debugging

Author: kvg

wdl/ValidateVariants.wdl

@@ -262,7 +262,7 @@ task SubsetBed {
     command <<<
         set -euxo pipefail
 
-        grep '^~{sample_id}' ~{sample_map} | cut -f2 | sed 's/-/_/g' | sed 's/,/\n/g' > loci.txt
+        grep '^~{sample_id}' ~{sample_map} | cut -f2 | sed 's/,/\n/g' > loci.txt
         cat loci.txt
         grep -f loci.txt ~{bed} > subset.bed
     >>>