We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
There was an error while loading. Please reload this page.
1 parent e033f08 commit 96140ddCopy full SHA for 96140dd
gnomad_qc/v5/annotations/generate_frequency.py
@@ -542,6 +542,8 @@ def mt_hists_fields(
542
)
543
qual_hists = qual_hist_expr(
544
gt_expr=mt.GT,
545
+ gq_expr=mt.GQ,
546
+ dp_expr=mt.DP,
547
adj_expr=mt.adj,
548
ab_expr=mt.AD[1] / hl.sum(mt.AD),
549
split_adj_and_raw=True,
@@ -792,9 +794,7 @@ def merge_gnomad_and_aou_frequencies(
792
794
# Both datasets now have the same structure: histograms.{qual_hists,
793
795
# raw_qual_hists, age_hists}
796
joined_hist_ht = merged_freq_ht.annotate(
- aou_histograms=aou_freq_ht[merged_freq_ht.key].histograms.drop(
- "raw_qual_hists"
797
- ),
+ aou_histograms=aou_freq_ht[merged_freq_ht.key].histograms,
798
799
800
# Merge age histograms
0 commit comments