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VeniceFindMarkers() returning error  #54

@jctac

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@jctac

Hello,

I am trying to run VeniceFindMarkers on a Seurat v3.1.5 integrated object with the default assay as SCT. Below is the line I'm trying to run.

VeniceFindMarkers(object = integrated, assay = "SCT", ident.1 = patient.neur.1, ident.2 = control.neur.1, logfc.threshold = 0)

The above line gives me the following error.

Error in as.character(x = ide5nt.2) %in% colnames(x = data.use) : object 'ide5nt.2' not found

TRACEBACK:

3. as.character(x = iden5nt.2) %in% colnames(x = data.use)
2. GetCellsIndices(data.use, object, ident.1, ident.2)
1. VeniceFindMarkers(object = integrated, assay = "SCT", ident.1 = patient.neur.1, ident.2 = control.neur.1, logfc.threshold = 0)

Can you please suggest a solution?
Thank you

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