-
Notifications
You must be signed in to change notification settings - Fork 6
Open
Description
Hello,
I am trying to run VeniceFindMarkers on a Seurat v3.1.5 integrated object with the default assay as SCT. Below is the line I'm trying to run.
VeniceFindMarkers(object = integrated, assay = "SCT", ident.1 = patient.neur.1, ident.2 = control.neur.1, logfc.threshold = 0)
The above line gives me the following error.
Error in as.character(x = ide5nt.2) %in% colnames(x = data.use) : object 'ide5nt.2' not found
TRACEBACK:
3. as.character(x = iden5nt.2) %in% colnames(x = data.use)
2. GetCellsIndices(data.use, object, ident.1, ident.2)
1. VeniceFindMarkers(object = integrated, assay = "SCT", ident.1 = patient.neur.1, ident.2 = control.neur.1, logfc.threshold = 0)
Can you please suggest a solution?
Thank you
Reactions are currently unavailable
Metadata
Metadata
Assignees
Labels
No labels