hera/Makefile_mac at master · bioturing/hera · GitHub

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CC= 	gcc

LIBS= 	-pthread 								\
	-lm lib/zlib/libz.a 							\
	-lm lib/hdf5/lib/libhdf5-static.a 					\
	-lm lib/hdf5/lib/libhdf5_hl-static.a -ldl 				\
	-lm lib/libdivsufsort/lib/libdivsufsort64.a

CFLAG=	-fgnu89-inline -O2 -w

SRC= 	src/ssw.c 								\
	src/xxhash.c 								\
	src/bgzf.c 								\
	src/hash_align.c 							\
	src/EM.c 								\
	src/bam_write.c 							\
	src/fmindex.c 								\
	src/genome_map.c 							\
	src/main.c 								\
	src/argument.c 								\
	src/get_buffer.c 							\
	src/read.c 								\
	src/usage.c 								\
	src/log.c

Hera:
	mkdir -p build/
	$(CC) $(CFLAG) $(SRC) $(LIBS) -o build/hera
	cp src/hera_build build/hera_build
	chmod +x build/hera_build

clean:
	rm -rf build
	rm -rf lib