When using sambamba to remove PCR duplicates, the code I use is:
sambamba markdup --overflow-list-size 600000 --tmpdir='./' -r C2C12-50cell-1.bam C2C12-50cell-1.rmdup.bam
Segmentation faults(core dumped) occur when duplicates are removed after they are identified.
Because I had run different data before, I could run it out, so I thought if the version was too low, I updated sambamba.
The above error no longer occurs after the update, but sambamba stops at identifying duplicates because the cpu usage is 0.
When using sambamba to remove PCR duplicates, the code I use is:
sambamba markdup --overflow-list-size 600000 --tmpdir='./' -r C2C12-50cell-1.bam C2C12-50cell-1.rmdup.bam
Segmentation faults(core dumped) occur when duplicates are removed after they are identified.
Because I had run different data before, I could run it out, so I thought if the version was too low, I updated sambamba.
The above error no longer occurs after the update, but sambamba stops at identifying duplicates because the cpu usage is 0.