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CHANGELOG.md

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@@ -7,28 +7,5 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
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## [Unreleased]
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### Added
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- Alternative start codons can now be used in the `synthesis/codon` DNA -> protein translation package (#305)
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- Added a parser and writer for the `pileup` sequence alignment format (#329)
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- Added statistics to the `synthesis/codon` package (keeping track of the observed start codon occurrences in a translation table) (#350)
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- Added option to fragmenter to fragment with only certain overhangs (#387)
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### Fixed
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- `fastq` parser no longer becomes de-aligned when reading (#325)
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- `fastq` now handles optionals correctly (#323)
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- No more data race in GoldenGate (#276)
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### Breaking
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- CutWithEnzymeByName is now a receiver of EnzymeManager. GoldenGate now takes an Enzyme instead of the name of an enzyme.
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This is an effort to remove dependence on some package level global state and build some flexibility managing enzymes
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over the lifetime of the program.
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- Enzyme.OverhangLen is now named Enzyme.OverhangLength
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## [0.26.0] - 2023-07-22
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Oops, we weren't keeping a changelog before this tag!
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[unreleased]: https://github.com/TimothyStiles/poly/compare/v0.26.0...main
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[0.26.0]: https://github.com/TimothyStiles/poly/releases/tag/v0.26.0
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- Fixed bug that produced wrong overhang in linear, non-directional, single cut reactions. #408

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