Dear Author,
In the ctx step, I run this flow:
pyscenic ctx
/pyscenic/output/grn/all_grn.tsv
/pyscenic/data/hg38_500bp_up_100bp_down_full_tx_v10_clust.genes_vs_motifs.rankings.feather
/pyscenic/data/hg38_10kbp_up_10kbp_down_full_tx_v10_clust.genes_vs_motifs.rankings.feather
--annotations_fname /pyscenic/data/motifs-v10nr_clust-nr.hgnc-m0.001-o0.0.tbl
--expression_mtx_fname /pyscenic/loom_counts/all.loom
--mode "dask_multiprocessing"
--output /pyscenic/output/ctx/all_ctx.csv
--num_workers 10
--mask_dropouts
I'm wondering whether it is correct if I use the 500bp and 10kbp file in the same time?
Best,
Yuki