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Description
I have already finished
scenicOptions <- runSCENIC_1_coexNetwork2modules(scenicOptions)
scenicOptions <- runSCENIC_2_createRegulons(scenicOptions, coexMethod=c("top5perTarget"))
scenicOptions <- runSCENIC_3_scoreCells(scenicOptions, exprMat_log)
scenicOptions <- runSCENIC_4_aucell_binarize(scenicOptions)
tsneAUC(scenicOptions, aucType="AUC")
[1] "int/tSNE_AUC_50pcs_30perpl.Rds"
str(aucellApp)
List of 3
$ thresholds: Named num [1:40] 0.0224 0.0347 0.0524 0.0353 0.2378 ...
..- attr(*, "names")= chr [1:40] "E2f7 (39g)" "E2f8 (20g)" "Tfdp1 (11g)" "E2f1 (42g)" ...
$ cells : list()
$ server :function (input, output, session)
I don't know why i use
aucellApp <- plotTsne_AUCellApp(scenicOptions, exprMat_log)
savedSelections <- shiny::runApp(aucellApp)

