Updating the exercises for my batch section on Monday

Author: bbrydsoe

Exercises/day3/c3se/mpi.sh

@@ -14,7 +14,7 @@
 
 # Set a path where the example programs are installed. 
 # Change the below to your own path to where you placed the example programs
-MYPATH=/proj/nobackup/fall-courses/<mydir-name>/HPC-python/Exercises/examples/programs/
+MYPATH=/mimer/NOBACKUP/groups/courses-fall-2025/<mydir-name>/Exercises/day3/programs/
 
 ml purge > /dev/null 2>&1
 ml Python/3.13.5-GCCcore-14.3.0

Exercises/day3/c3se/pandas_matplotlib-batch.sh

@@ -1,18 +1,19 @@
 #!/bin/bash
 # Remember to change this to your own project ID!
-#SBATCH -A hpc2n2025-151
+#SBATCH -A naiss2025-22-934
 # We are asking for 5 minutes
 #SBATCH --time=00:05:00
 # Asking for one core
 #SBATCH -n 1 
 
 # Change to the directory where the data files and program are located
 # Change the below to your own path to where you placed the example programs
-cd /proj/nobackup/fall-courses/<mydir-name>/HPC-python/Exercises/examples/programs/
+cd /mimer/NOBACKUP/groups/courses-fall-2025/<mydir-name>/Exercises/day3/programs/
+
 
 # Remove any loaded modules and load the ones we need
 module purge  > /dev/null 2>&1
-module load GCC/12.3.0 Python/3.11.3 SciPy-bundle/2023.07 matplotlib/3.7.2  
+module load matplotlib/3.10.5-gfbf-2025b   
 
 # Run your Python script
 python pandas_matplotlib-batch.py

Exercises/day3/c3se/run_mmmult.sh

@@ -1,16 +1,16 @@
 #!/bin/bash
 # Change to your own project ID! 
-#SBATCH -A hpc2n2025-151
+#SBATCH -A naiss2025-22-934
 #SBATCH --time=00:10:00 # Asking for 10 minutes
 #SBATCH -n 1 # Asking for 1 core
 
 # Set a path where the example programs are installed. 
 # Change the below to your own path to where you placed the example programs
-MYPATH=/proj/nobackup/fall-courses/<mydir-name>/HPC-python/Exercises/examples/programs/
+MYPATH=/mimer/NOBACKUP/groups/courses-fall-2025/<mydir>/Exercises/day3/programs 
 
 # Load any modules you need, here for Python 3.11.3 and compatible SciPy-bundle
 module purge  > /dev/null 2>&1
-module load GCC/12.3.0 OpenMPI/4.1.5 Python/3.11.3 SciPy-bundle/2023.07
+module load Python/3.11.3-GCCcore-12.3.0 OpenMPI/4.1.5-GCC-12.3.0 SciPy-bundle/2023.07-gfbf-2023a
 
 # Run your Python script
 python $MYPATH/mmmult.py

Exercises/day3/c3se/run_serial_virtualenv.sh

@@ -1,21 +1,18 @@
 #!/bin/bash
-#SBATCH -A hpc2nXXXX-YYY # Change to your own
+#SBATCH -A naiss2025-22-934 # Change to your own
 #SBATCH --time=00:10:00 # Asking for 10 minutes
 #SBATCH -n 1 # Asking for 1 core
 
 # Set a path where the example programs are installed. 
 # Change the below to your own path to where you placed the example programs
-MYPATH=/proj/nobackup/<your-projecct-storage>/<mydir-name>/HPC-python/Exercises/examples/programs/
+MYPATH=/mimer/NOBACKUP/groups/courses-fall-2025/<mydir-name>/Exercises/day3/programs/
 
-# Load any modules you need, here for Python 3.9.5 and compatible SciPy-bundle
-module load GCC/10.3.0 OpenMPI/4.1.1 Python/3.9.5 SciPy-bundle/2021.05 matplotlib/3.4.2
+module load matplotlib/3.10.5-gfbf-2025b 
 
 # Activate your virtual environment. 
 # CHANGE <path-to-virt-env> to the full path where you installed your 
-# virtual environment. For instance, the vpyenv created in the course 
-# would work with this example 
-# Example: /proj/nobackup/hpc2nXXXX-YYY/<mydir-name>/pythonHPC2N 
+# virtual environment.  
 source <path-to-virt-env>/bin/activate
 
 # Run your Python script - remember to add the name of your script
-python $MYPATH/seaborn-example.py
+python $MYPATH/virt-example.py

Exercises/day3/c3se/run_sum-2args.sh

@@ -1,15 +1,17 @@
 #!/bin/bash
-#SBATCH -A hpc2n2025-151 # Change to your own
+#SBATCH -A naiss2025-22-934 # Change to your own
 #SBATCH --time=00:05:00 # Asking for 5 minutes
 #SBATCH -n 1 # Asking for 1 core
 
 # Set a path where the example programs are installed. 
 # Change the below to your own path to where you placed the example programs
-MYPATH=/proj/nobackup/fall-courses/<mydir-name>/HPC-python/Exercises/examples/programs/
+MYPATH=/mimer/NOBACKUP/groups/courses-fall-2025/<mydir-name>/Exercises/day3/programs/
 
 # Load any modules you need, here for Python 3.11.3
 module purge > /dev/null 2>&1
-module load GCC/12.3.0 OpenMPI/4.1.5 Python/3.11.3 SciPy-bundle/2023.07 
+module load Python/3.11.5-GCCcore-13.2.0
+module load SciPy-bundle/2025.07-gfbf-2025b
+module load Python-bundle-PyPI/2025.07-GCCcore-14.3.0
 
 # Run your Python script
 python $MYPATH/sum-2args.py 2 3 

Exercises/day3/hpc2n/integration2d_mpi.sh Exercises/day3/hpc2n/mpi.shExercises/day3/hpc2n/integration2d_mpi.sh renamed to Exercises/day3/hpc2n/mpi.sh

@@ -8,15 +8,11 @@
 
 # Set a path where the example programs are installed. 
 # Change the below to your own path to where you placed the example programs
-MYPATH=/proj/nobackup/fall-courses/<mydir-name>/HPC-python/Exercises/examples/programs/
+MYPATH=/proj/nobackup/fall-courses/<mydir-name>/Exercises/day3/programs/
 
 ml purge > /dev/null 2>&1
 ml GCC/12.3.0 Python/3.11.3
 ml OpenMPI/4.1.5
 ml SciPy-bundle/2023.07 mpi4py/3.1.4 
-#ml Julia/1.7.1-linux-x86_64  # if Julia is needed
-
-# CHANGE THE PATH BELOW TO YOUR OWN PATH if you need a virtual environment 
-#source /proj/nobackup/<your-proj-id>/<mydir-name>/<path-to-vpyenv-python-course>/bin/activate
 
 mpirun -np 4 python $MYPATH/integration2d_mpi.py

Exercises/day3/hpc2n/pandas_matplotlib-batch.sh

@@ -8,7 +8,7 @@
 
 # Change to the directory where the data files and program are located
 # Change the below to your own path to where you placed the example programs
-cd /proj/nobackup/fall-courses/<mydir-name>/HPC-python/Exercises/examples/programs/
+cd /proj/nobackup/fall-courses/<mydir-name>/Exercises/day3/programs/
 
 # Remove any loaded modules and load the ones we need
 module purge  > /dev/null 2>&1

Exercises/day3/hpc2n/run_mmmult.sh

@@ -6,7 +6,7 @@
 
 # Set a path where the example programs are installed. 
 # Change the below to your own path to where you placed the example programs
-MYPATH=/proj/nobackup/fall-courses/<mydir-name>/HPC-python/Exercises/examples/programs/
+MYPATH=/proj/nobackup/fall-courses/<mydir-name>/Exercises/day3/programs/
 
 # Load any modules you need, here for Python 3.11.3 and compatible SciPy-bundle
 module purge  > /dev/null 2>&1

Exercises/day3/hpc2n/run_serial_virtualenv.sh

@@ -1,21 +1,22 @@
 #!/bin/bash
-#SBATCH -A hpc2nXXXX-YYY # Change to your own
+#SBATCH -A hpc2n2025-151 # Change to your own
 #SBATCH --time=00:10:00 # Asking for 10 minutes
 #SBATCH -n 1 # Asking for 1 core
 
 # Set a path where the example programs are installed. 
 # Change the below to your own path to where you placed the example programs
-MYPATH=/proj/nobackup/<your-projecct-storage>/<mydir-name>/HPC-python/Exercises/examples/programs/
+MYPATH=/proj/nobackup/fall-courses/<mydir-name>/Exercises/day3/programs/
 
-# Load any modules you need, here for Python 3.9.5 and compatible SciPy-bundle
-module load GCC/10.3.0 OpenMPI/4.1.1 Python/3.9.5 SciPy-bundle/2021.05 matplotlib/3.4.2
+# Load any modules you need
+module load GCC/13.2.0 Python/3.11.5
+module load SciPy-bundle/2023.11
+module load Python-bundle-PyPI/2023.10
 
-# Activate your virtual environment. 
+# Activate your virtual environment, which was created with the same modules loaded as bove. 
 # CHANGE <path-to-virt-env> to the full path where you installed your 
-# virtual environment. For instance, the vpyenv created in the course 
-# would work with this example 
+# virtual environment.  
 # Example: /proj/nobackup/hpc2nXXXX-YYY/<mydir-name>/pythonHPC2N 
 source <path-to-virt-env>/bin/activate
 
 # Run your Python script - remember to add the name of your script
-python $MYPATH/seaborn-example.py
+python $MYPATH/virt-example.py

Exercises/day3/hpc2n/run_sum-2args.sh

@@ -5,7 +5,7 @@
 
 # Set a path where the example programs are installed. 
 # Change the below to your own path to where you placed the example programs
-MYPATH=/proj/nobackup/fall-courses/<mydir-name>/HPC-python/Exercises/examples/programs/
+MYPATH=/proj/nobackup/fall-courses/<mydir-name>/Exercises/day3/programs/
 
 # Load any modules you need, here for Python 3.11.3
 module purge > /dev/null 2>&1