TS/NAMESPACE at main · TimothySundell/TS · GitHub

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# Generated by roxygen2: do not edit by hand

export(TS_DEenrichRPlot)
export(TS_FindConservedMarkers)
export(TS_Find_DEGs_and_overlap)
export(TS_IGHV_usage_prop_with_stats)
export(TS_Seurat_from_file)
export(TS_add_sig_segments_and_labels)
export(TS_calculate_ratios)
export(TS_cellnumbers_per_PC_and_resolution)
export(TS_compute_pairwise_fisher)
export(TS_dataframe_to_fasta)
export(TS_export_cluster_ids)
export(TS_export_named_ids)
export(TS_extract_ig_mean_median_rank_per_PC)
export(TS_extract_ig_ranks_per_PC)
export(TS_extract_ranked_genes_per_PC)
export(TS_featureplots)
export(TS_format_IMGT_to_cellranger)
export(TS_plot_3D)
export(TS_plot_IG_usage)
export(TS_plot_IG_usage_legacy)
export(TS_plot_column_chart)
export(TS_plot_column_pattern_chart)
export(TS_plot_counts_boxplot)
export(TS_plot_counts_violin)
export(TS_plot_enrichR)
export(TS_project_scRNAseq_dataset)
export(TS_project_scRNAseq_dataset_export_query)
export(TS_run_enrichR)
export(TS_seurat_object_stats)
export(TS_svg_from_featureplot)
export(TS_svg_from_plot)
export(TS_visdimloadings)
export(ram_usage)
import(ggpattern)
importFrom(dplyr,"%>%")
importFrom(dplyr,all_of)
importFrom(dplyr,arrange)
importFrom(dplyr,case_when)
importFrom(dplyr,count)
importFrom(dplyr,enquo)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,mutate)
importFrom(dplyr,n_distinct)
importFrom(dplyr,pull)
importFrom(dplyr,rename)
importFrom(dplyr,select)
importFrom(dplyr,summarise)
importFrom(dplyr,sym)
importFrom(dplyr,ungroup)
importFrom(ggplot2,aes)
importFrom(ggplot2,geom_col)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,theme)
importFrom(ggplot2,ylab)
importFrom(ggplot2,ylim)
importFrom(ggrepel,geom_label_repel)
importFrom(magrittr,"%>%")
importFrom(purrr,map)
importFrom(purrr,map2_dbl)
importFrom(purrr,map_dfr)
importFrom(purrr,pluck)
importFrom(rlang,.data)
importFrom(stats,fisher.test)
importFrom(stats,p.adjust)
importFrom(stringr,str_detect)
importFrom(stringr,str_extract)
importFrom(stringr,str_sub)
importFrom(tibble,deframe)
importFrom(tidyr,complete)
importFrom(tidyr,nest)
importFrom(tidyr,pivot_wider)
importFrom(tidyr,unnest)