My data produces an adjacency matrix with many nodes and edges when I run it through CAT-NAP. In the step 4 plots, many edges overlapped and blocked each other.
I tried to fix these plots myself. I opened the MEA-NAP GUI and selected the 'Advanced Settings' option. I then went to the Advanced Plotting tab and decreased maximum edges from 10000 to 1000 and selected the hightoLow edge subsampling method.
I used CAT-NAP again on the same data, and the network metric and node cartography plots were unchanged. No edges were removed even though I decreased the maximum edges parameter. getParamsfromApp.m saves maximum edges as Params.maxNumEdgesToPlot and edge subsampling method as Param.edgeSubsamplingMethod. However,
Upon further inspection, I see that Params.maxNumEdgesToPlot and Params.edgeSubsamplingMethod are not implemented in plotNodeCartography.m or plotIndvNetMet.m, so they do not seem to affect how many edges are included in step 4 plots.
My data produces an adjacency matrix with many nodes and edges when I run it through CAT-NAP. In the step 4 plots, many edges overlapped and blocked each other.
I tried to fix these plots myself. I opened the MEA-NAP GUI and selected the 'Advanced Settings' option. I then went to the Advanced Plotting tab and decreased maximum edges from 10000 to 1000 and selected the hightoLow edge subsampling method.
I used CAT-NAP again on the same data, and the network metric and node cartography plots were unchanged. No edges were removed even though I decreased the maximum edges parameter. getParamsfromApp.m saves maximum edges as Params.maxNumEdgesToPlot and edge subsampling method as Param.edgeSubsamplingMethod. However,
Upon further inspection, I see that Params.maxNumEdgesToPlot and Params.edgeSubsamplingMethod are not implemented in plotNodeCartography.m or plotIndvNetMet.m, so they do not seem to affect how many edges are included in step 4 plots.