DeepPumas for viral dynamics workshop

This repository holds everything we need for the PumasAI workshop in Bordeaux 2026.

To see the course introduction and slides, head to the workshop website.

To run the hands-on exercises,

• Fire up a DeepPumas app in juliahub.com
  • You should have received a coupon code in your email. This code will give you credits and access to the DeepPumas app.
  • When launching the DeepPumas app, use "launch custom instance" and select 16vCPU and a 9h time limit.
• Wait a minute for the VSCode view to pop up in your browser.
• Clone this repository either
  • In the GUI
    1. Bring up the command pallette (Ctrl+shift+p, or from the cogwheel in the bottom left corner)
    2. Search for git clone
    3. clone https://github.com/PumasAI-Labs/ViralDynamicsWorkshop.git
  • or, in the terminal terminal
    1. If you don't have a terminal, open one by searching for Terminal: focus on terminal view in the command pallette.
    2. Navigate to ~/data/code
    3. Clone using git clone https://github.com/PumasAI-Labs/ViralDynamicsWorkshop.git