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Description
Some experiment files contain mRECIST drug response values. The indentifier in the dose_respone_metric column has a typo (mRESCIST).
Example:
>> novartis_experiments.tsv.gz
improve_drug_id improve_sample_id time_unit time dose_response_metric dose_response_value source study
...
SMI_57366 3359.0 days 47 mRESCIST SD Synapse Novartis PDX Gao etal 2015
It looks to me like the typo is introduced in calc_pdx_metrics.py. A quick search in the file yielded 3 instances of spelling mistakes.
| nxdf = {'metric':'mRESCIST','value':None} |
| nxdf = {'metric':'mRESCIST','value':mrecist} |
| nxdf = {'metric':'mRESCIST','value':mrecist} |
There might be more instances but those where the ones I could find with a quick lookup.
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