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PhysicsNeMo Pull Request

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  • New or existing tests cover these changes.
  • The documentation is up to date with these changes.
  • The CHANGELOG.md is up to date with these changes.
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greptile-apps bot commented Nov 14, 2025

Greptile Overview

Greptile Summary

Fixed an off-by-one error in the shape validation logic for SongUNet. The validation now correctly requires input dimensions to be multiples of 2^(N-1) instead of 2^N, matching the actual downsampling behavior of the U-Net architecture.

  • Updated _input_shape_mult calculation from 2**self._num_levels to 2 ** (self._num_levels - 1) in physicsnemo/models/diffusion/song_unet.py:340
  • Updated documentation and error messages to reflect the correct formula
  • The bug was introduced in PR Added input shape validation for SongUnet #1181 and is now corrected

The fix is mathematically correct: with N levels and level 0 having no downsampling, the architecture performs (N-1) downsampling operations, resulting in a total downsampling factor of 2^(N-1).

Confidence Score: 5/5

  • This PR is safe to merge with high confidence
  • The change is a straightforward mathematical correction that fixes an off-by-one error in shape validation. The fix aligns the validation logic with the actual U-Net architecture implementation, which performs (N-1) downsampling operations for N levels. The changes are minimal, well-contained, and affect only the validation logic without modifying the core architecture behavior.
  • No files require special attention

Important Files Changed

File Analysis

Filename Score Overview
physicsnemo/models/diffusion/song_unet.py 5/5 corrected shape validation from 2^N to 2^(N-1) to match actual downsampling in U-Net architecture

Sequence Diagram

sequenceDiagram
    participant User
    participant SongUNet
    participant Validation
    participant Encoder
    participant Decoder

    User->>SongUNet: forward(x, noise_labels, class_labels)
    SongUNet->>Validation: Check input shape dimensions
    
    alt Level 0 (no downsampling)
        Note over Validation: Resolution = H
    end
    
    alt Level 1
        Note over Validation: Resolution = H/2 (1 downsample)
    end
    
    alt Level N-1
        Note over Validation: Resolution = H/2^(N-1)
    end
    
    Validation->>Validation: Verify d is power of 2 OR multiple of 2^(N-1)
    
    alt Valid dimensions
        Validation->>Encoder: Process through encoder levels
        Encoder->>Decoder: Pass through N levels with skip connections
        Decoder->>SongUNet: Return denoised output
        SongUNet->>User: Output tensor
    else Invalid dimensions
        Validation->>User: ValueError: dimensions must be powers of 2 or multiples of 2^(N-1)
    end
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1 file reviewed, no comments

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LGTM

@CharlelieLrt
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/blossom-ci

@CharlelieLrt CharlelieLrt merged commit 1a52284 into NVIDIA:main Nov 14, 2025
1 check passed
coreyjadams added a commit that referenced this pull request Nov 18, 2025
* Move filesystems and version_check to core

* Fix version check tests

* Reorganize distributed, domain_parallel, and begin nn / utils cleanup.

* Move modules and meta to core.  Move registry to core.

No tests fixed yet.

* Add missing init files

* Update build system and specify some deps.

* Reorganize tests.

* Update init files

* Clean up neighbor tools.

* Update testing

* Fix compat tests

* Move core model tests to tests/core/

* Add import lint config

* Relocate layers

* Move graphcast utils into model directory

* Relocating util functionalities.

* Further clean up and organize tests.

* utils tests are passing now

* Cleaning up distributed tests

* Patching tests working again in nn

* Fix sdf test

* Fix zenith angle tests

* Some organization of tests.  Checkpoints is moved into utils.

* Remove launch.utils and launch.config.  Checkpointing is moved to
phsyicsnemo.utils, launch.config is just gone.  It was empty.

* Most nn tests are passing

* Further cleanup.  Getting there!

* Remove constants file

* Add import linting to pre-commit.

* Update crash readme (#1212)

* update license headers- second try

* update readme

* Bump multi-storage-client to v0.33.0 with rust client (#1156)

* Move gnn layers and start to fix several model tests.

* AFNO is now passing.

* Rnn models passing.

* Fix improt

* Healpix tests are working

* Domino and unet working

* Add jaxtyping to requirements.txt for crash sample (#1218)

* update license headers- second try

* Update requirements.txt

* Updating to address some test issues

* Replace 'License' link with 'Dev blog' link (#1215)

Co-authored-by: Corey adams <[email protected]>

* MGN tests passing again

* Most graphcast tests passing again

* Move nd conv layers.

* update fengwu and pangu

* Update sfno and pix2pix test

* update tests for figconvnet, swinrnn, superresnet

* updating more models to pass

* Update distributed tests, now passing.

* Validation fu added to examples/structural_mechanics/crash/train.py (#1204)

* validation added: works for multi-node job.

* rename and rearrange validation function

* validate_every_n_epochs, save_ckpt_every_n_epochs added in config

* corrected bug (args of model) in inference

* args in validation code updated

* val path added and args name changed

* validation split added -> write_vtp=False

* fixed inference bug

* bug fix: write_vtp

* Domain parallel tests now passing.

* Fix active learning imports so tests pass in refactor

* Fix some metric imports

* Remove deploy package

* Remove unused test file

* unmigrate these files ... again?

* Update import linter.

* Add saikrishnanc-nv to github actors (#1225)

* Integrate Curator instructions to the Crash example (#1213)

* Integrate Curator instructions

* Update docs

* Formatting changes

* Adding code of conduct (#1214)

* Adding code of conduct

Adopting the code of conduct from the https://www.contributor-covenant.org/

* Update CODE_OF_CONDUCT.MD

Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com>

* Create .markdownlintignore

* Revise README for PhysicsNeMo resources and guidance

Updated the 'Getting Started' section and added new resources for learning AI Physics.

* Update README.md

---------

Co-authored-by: Mohammad Amin Nabian <[email protected]>
Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com>
Co-authored-by: Corey adams <[email protected]>

* Cleaning up diffusion models. Not quite done yet.

* Restore deleted files

* Updating more tests.

* Fixed minor bug in shape validation in SongUNet (#1230)

Signed-off-by: Charlelie Laurent <[email protected]>

* Add Zarr reader for Crash (#1228)

* Add Zarr reader for Crash

* Update README

* Update validation logic of point data in Zarr reader

Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com>

* Update examples/structural_mechanics/crash/zarr_reader.py

Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com>

* Add a test for 2D feature arrays

* Update examples/structural_mechanics/crash/zarr_reader.py

Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com>

---------

Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com>

* Further updates to tests.  Datapipes almost working.

* update import paths

* Starting to clean up dependency tree.

---------

Signed-off-by: Charlelie Laurent <[email protected]>
Co-authored-by: Mohammad Amin Nabian <[email protected]>
Co-authored-by: Yongming Ding <[email protected]>
Co-authored-by: ram-cherukuri <[email protected]>
Co-authored-by: Deepak Akhare <[email protected]>
Co-authored-by: Sai Krishnan Chandrasekar <[email protected]>
Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com>
Co-authored-by: Charlelie Laurent <[email protected]>
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2 participants