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contextFactory2.m
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179 lines (164 loc) · 5.38 KB
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clear classes;
close all;
rootDir = 'C:/matdl/yaron/2010a/';
maxIter = 500;
for propWeights = 0
for EtotWeight = 1 %$[1e7 1 5 10 20 0.1 0.5 30 0.25 0.75]
topDir = [rootDir,'w',num2str(EtotWeight)];
if (propWeights)
topDir = [topDir,'p/'];
else
topDir = [topDir,'/'];
end
printDetailsOnLoad = 0;
dname1=cell(0,0); fname=cell(0,0);
gTrain=cell(0,0); gTest=cell(0,0);
eTrain=cell(0,0); eTest=cell(0,0); pnn=[];
h2 = 1;
fname{end+1} = 'h2Dat'; dname1{end+1}=fname{end};
gTrain{end+1}=[1 3 5 7]; eTrain{end+1}=1:2:20;
gTest{end+1} =[2 4 6]; eTest{end+1} =2:2:20; pnn(end+1) = 796;
ch4r = 2;
fname{end+1} = 'ch4rDat'; dname1{end+1}=fname{end};
gTrain{end+1}=1:10; eTrain{end+1}=1:2:20;
gTest{end+1} =11:20; eTest{end+1} =2:2:20; pnn(end+1) = 791;
ethaner = 3;
fname{end+1} = 'ethanerDat'; dname1{end+1}=fname{end};
gTrain{end+1}=1:10; eTrain{end+1}=1:2:20;
gTest{end+1} =11:20; eTest{end+1} =2:2:20; pnn(end+1) = 792;
ethylener =4;
fname{end+1} = 'ethylenerDat'; dname1{end+1}=fname{end};
gTrain{end+1}=1:10; eTrain{end+1}=1:2:20;
gTest{end+1} =11:20; eTest{end+1} =2:2:20; pnn(end+1) = 793;
toFit = {[ethaner]};%{[ch4r], [ethaner], [ch4r,ethaner]};
dsets = cell(1,2);
dname = cell(1,1);
ic = 0;
for ifit = 1:length(toFit)
ic = ic+1;
name = '';
for idata = toFit{ifit}
if (isempty(name))
name = dname1{idata};
else
name = [name,'_',dname1{idata}];
end
end
mtrain = MSet;
mtest = MSet;
for idata = toFit{ifit}
dfile = ['datasets/',fname{idata},'.mat'];
mtrain.addData(dfile, gTrain{idata}, eTrain{idata} ,1,pnn(idata));
mtest.addData(dfile, gTest{idata}, eTest{idata} ,1,pnn(idata));
end
dname{ic} = name;
dsets{ic,1} = mtrain;
dsets{ic,2} = mtest;
end
% CREATE POLICIES
pname = {'hybridslater1'};
%
for ipol = 1:length(pname)
for idata = 1:size(dsets,1)
filePre=[pname{ipol},'/',dname{idata}];
dataDir = [topDir,filePre];
if (exist(dataDir,'dir') ~= 7)
status = mkdir(dataDir);
end
copyfile('c:/dave/apoly/msqc/contextFactory2.m',...
[dataDir,'/contextFactory2.m']);
summaryName = [topDir,filePre,'/summary.txt'];
% if (exist(summaryName,'file'))
% delete(summaryName);
% end
summaryFile = fopen(summaryName,'a');
diaryName = [topDir,filePre,'/cfit.diary'];
% if (exist(diaryName,'file'))
% delete(diaryName);
% end
diary(diaryName);
diary on;
% Create fitme object
fact = MFactory;
fact.setPolicies(pname{ipol});
fact.makeMixInfo(dsets{idata,1}.atomTypes);
f1 = fact.makeFitme(dsets{idata,1});
ftest = fact.makeFitme(dsets{idata,2});
input junk;
% Add weighting
%f1.setWeights(EtotWeight,propWeights);
fprintf(summaryFile,'train and test starting error \n');
f1.printEDetails(summaryFile);
ftest.printEDetails(summaryFile);
%
startName = [topDir,filePre,'/start.mat'];
toSave = {'fact','f1','ftest','currentTrainErr', ...
'currentPar','currentErr'};
if (exist(startName,'file'))
fprintf(1,'LOADING START \n');
fprintf(summaryFile,'LOADING START \n');
load(startName,toSave{:});
loaded = 1;
else
[currentTrainErr,currentPar,currentErr] = ...
contextFit3(f1,ftest,maxIter);
save(startName,toSave{:});
loaded = 0;
end
str1 = 'initial error %12.5f test %12.5f \n';
fprintf(1,str1,currentTrainErr,currentErr);
fprintf(summaryFile,str1,currentTrainErr,currentErr);
if (~loaded || printDetailsOnLoad)
f1.printEDetails(summaryFile);
ftest.printEDetails(summaryFile);
end
ticID = tic;
for iter = 1:3
allName = [topDir,filePre,'/all-',num2str(iter),'.mat'];
if (exist(allName,'file'))
fprintf(1,'LOADING ITERATION %i \n',iter);
fprintf(summaryFile,'LOADING ITERATION %i \n',iter);
load(allName,toSave{:});
loaded = 1;
else
loaded = 0;
fprintf(1,'STARTING ITERATION %i \n',iter);
fprintf(summaryFile,'STARTING ITERATION %i \n',iter);
% unfix 1 level of context
for imix = 1:length(f1.mixers)
mix = f1.mixers{imix};
for ipar = 1:length(mix.fixed)
if (mix.fixed(ipar) == 1)
mix.fixed(ipar) = 0;
break;
end
end
end
[currentTrainErr,currentPar,currentErr] = ...
contextFit3(f1,ftest,maxIter);
save(allName,toSave{:});
end
str2 = 'context error %12.5f test %12.5f \n';
fprintf(1,str2,currentTrainErr,currentErr);
fprintf(summaryFile,str2,currentTrainErr,currentErr);
if (~loaded || printDetailsOnLoad)
f1.printEDetails(summaryFile);
ftest.printEDetails(summaryFile);
end
end
runTime = toc(ticID)
diary off;
fclose(summaryFile);
% %%
% for i=1:length(errors)
% mix = f1.mixers{mixes{i}.imix};
% ipar = mixes{i}.ipar;
% etemp = errors(i);
% disp([mix.desc,' context ',num2str(ipar),' err ', ...
% num2str(etemp)]);
% disp(['pars ',num2str(pars{i})]);
% end
end
end
end
end