Notebook gallery

Gallery of Jupyter notebooks representing use cases

Notebooks in this repository

Notebook name	Description	Open in this repository	Link to Binder
subject_data.ipynb	It calculates descriptive statistics for a group of subjects from tabular data	open
image_data_mha.ipynb	It extracts image spacing, size, and pixel type from a group of .mha images	open
isq_io_viz.ipynb	Reading, writing, and visualizing .isq images	open	Coming soon

How to explore the notebooks in this repository

• The very easy way:
  • Go to binder:
  • Open a notebook
  • Run all cells (Cell -> Run all cells) or run one cell at the time sequentially (click on a cell -> Cell -> Run cell)
  • Do not forget to read the narrative of the notebook!
• The easy way:
  • If you are not familiar with the Jupyter/python enviroment, watch this tutorial
  • Clone or download this repository (green button code above)
  • Open a notebook, run it, and then try it with your own data!

Notebooks in other repositories

Repository	Description	Open in this repository	Where to start exploring
ITKIOScanco	An ITK module to read and write Scanco microCT .isq files.	go to repository	Click on the launch binder badge
pyKNEEr	An open and reproducible workflow for knee cartilage segmentation	go to repository	Click on the launch binder badges