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modules.json
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155 lines (155 loc) · 6.99 KB
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{
"name": "IntGenomicsLab/lrsomatic",
"homePage": "https://github.com/IntGenomicsLab/lrsomatic",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"ascat": {
"branch": "master",
"git_sha": "98ffb090029d17a9fb8de75dadcfe6bc8b6377ec",
"installed_by": ["modules"]
},
"bcftools/concat": {
"branch": "master",
"git_sha": "e753770db613ce014b3c4bc94f6cba443427b726",
"installed_by": ["modules", "vcf_gather_bcftools"]
},
"bcftools/merge": {
"branch": "master",
"git_sha": "f17049e03697726ace7499d2fe342f892594f6f3",
"installed_by": ["modules"]
},
"bcftools/sort": {
"branch": "master",
"git_sha": "e753770db613ce014b3c4bc94f6cba443427b726",
"installed_by": ["vcf_gather_bcftools"],
"patch": "modules/nf-core/bcftools/sort/bcftools-sort.diff"
},
"ensemblvep/download": {
"branch": "master",
"git_sha": "2fcc53751152a999bfc9c24f75f494b9e5bb338f",
"installed_by": ["modules"]
},
"ensemblvep/vep": {
"branch": "master",
"git_sha": "0567eee9276d4a358e5f9f01c810a149fbd241f8",
"installed_by": ["modules"],
"patch": "modules/nf-core/ensemblvep/vep/ensemblvep-vep.diff"
},
"longphase/haplotag": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"]
},
"longphase/phase": {
"branch": "master",
"git_sha": "47983538e45e539f783ed8ab0d1c96d39df2af8f",
"installed_by": ["modules"],
"patch": "modules/nf-core/longphase/phase/longphase-phase.diff"
},
"minimap2/align": {
"branch": "master",
"git_sha": "1a5a9e7b4009dcf34e6867dd1a5a1d9a718b027b",
"installed_by": ["modules"]
},
"minimap2/index": {
"branch": "master",
"git_sha": "e753770db613ce014b3c4bc94f6cba443427b726",
"installed_by": ["modules"]
},
"modkit/pileup": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"]
},
"mosdepth": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"]
},
"multiqc": {
"branch": "master",
"git_sha": "af27af1be706e6a2bb8fe454175b0cdf77f47b49",
"installed_by": ["modules"]
},
"pigz/uncompress": {
"branch": "master",
"git_sha": "e753770db613ce014b3c4bc94f6cba443427b726",
"installed_by": ["modules"]
},
"samtools/cat": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"]
},
"samtools/faidx": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"]
},
"samtools/flagstat": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"]
},
"samtools/idxstats": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"]
},
"samtools/index": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"]
},
"samtools/stats": {
"branch": "master",
"git_sha": "f4eab7945952dc4934224309701a49913ea05ae6",
"installed_by": ["modules"]
},
"severus": {
"branch": "master",
"git_sha": "81880787133db07d9b4c1febd152c090eb8325dc",
"installed_by": ["modules"],
"patch": "modules/nf-core/severus/severus.diff"
},
"untar": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"]
},
"unzip": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"]
},
"wget": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"]
}
}
},
"subworkflows": {
"nf-core": {
"utils_nextflow_pipeline": {
"branch": "master",
"git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
"installed_by": ["subworkflows"]
},
"utils_nfcore_pipeline": {
"branch": "master",
"git_sha": "271e7fc14eb1320364416d996fb077421f3faed2",
"installed_by": ["subworkflows"]
},
"utils_nfschema_plugin": {
"branch": "master",
"git_sha": "4b406a74dc0449c0401ed87d5bfff4252fd277fd",
"installed_by": ["subworkflows"]
}
}
}
}
}
}