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UserManual.md

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# User Manual
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**Table of Contents**
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- [1. Filtering_epoching.m](#1-filtering-epochingm)
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- [1. Filtering epoching.m](#1-filtering-epochingm)
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* [1.1 Settings](#11-settings)
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* [1.2 Parameters](#12-parameters)
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* [1.3 Algorithms options](#13-algorithms-options)
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* [1.4 Files path](#14-files-path)
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* [1.5 Subject specific analyses](#15-subject-specific-analyses)
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* [1.6 Epoching parameters](#16-epoching-parameters)
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* [1.7 Output files](#17-output-files)
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- [2 Comp_ICA.m](#2-comp-icam)
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- [2 Comp ICA.m](#2-comp-icam)
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* [2.1 ICA Decomposition and Algorithms](#21-ica-decomposition-and-algorithms)
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* [2.2 MPICH2](#22-mpich2)
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* [2.3 Loading and Saving Data](#23-loading-and-saving-data)
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* [3.7 Advice for interpolation](#37-advice-for-interpolation)
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## 1. Filtering_epoching.m
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## 1. Filtering epoching.m
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**⚠️ Leave the defaults values if you don't know what you are doing!**
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Additionnaly, a to_interpolate.csv file is created at the same place. It will allow you to later indicate to the [ERPs.m](ERPs.m) script which channels are to be interpolated. \ Do not touch it at the moment.
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## 2 Comp_ICA.m
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## 2 Comp ICA.m
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With this script, you can compute ICA to detect and reject artifacts components such as eye-blinks, eyes and muscles movements or even cardiac artifacts.
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