torchref/base/__init__.py:210:5: F401 `.alignment.binned_correlation` imported but unused; consider removing, adding to `__all__`, or using a redundant alias help: Add unused import `binned_correlation` to __all__

torchref/base/__init__.py:189:49: F401 `.get_scattering_factor_torch.calc_scattering_factors_paramtetrization` imported but unused; consider removing, adding to `__all__`, or using a redundant alias help: Add unused import `calc_scattering_factors_paramtetrization_legacy` to __all__

torchref/base/__init__.py:64:5: F401 `.direct_summation` imported but unused; consider removing, adding to `__all__`, or using a redundant alias help: Add unused import `direct_summation` to __all__

torchref/alignment/rigid_body.py:405:19: F541 f-string without any placeholders help: Remove extraneous `f` prefix

torchref/alignment/rigid_body.py:30:31: F401 `torchref.symmetry.spacegroup` imported but unused help: Remove unused import: `torchref.symmetry.spacegroup`

torchref/alignment/rigid_body.py:22:30: F401 `typing.Tuple` imported but unused help: Remove unused import: `typing.Tuple`

torchref/alignment/ball_transform.py:24:26: F401 `typing.List` imported but unused help: Remove unused import

torchref/alignment/ball_transform.py:24:20: F401 `typing.Dict` imported but unused help: Remove unused import

torchref/alignment/ball_transform.py:22:8: F401 `math` imported but unused help: Remove unused import: `math`

torchref/alignment/__init__.py:86:9: F811 Redefinition of unused `cluster_rotation_peaks` from line 66: `cluster_rotation_peaks` redefined here torchref/alignment/__init__.py:66:9: previous definition of `cluster_rotation_peaks` here help: Remove definition: `cluster_rotation_peaks`

Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@v4, actions/setup-python@v5. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v5, codecov/codecov-action@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v5. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v5. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/