There are a few quirks to the actual process that are not super clearly defined in this template and need adding: - [ ] Use of updated Combinato (https://github.com/HSUPipeline/combinato) - Addresses: https://github.com/jniediek/combinato/issues/82 - Note: not super obvious here how to set the sampling rate for different file definitions - [ ] Notes on setting users in shell script (mentioned in the folder, not in the docs) - [ ] For shell script: edit / add notes about running 1 polarity vs 2 (and running two together)
There are a few quirks to the actual process that are not super clearly defined in this template and need adding: