Fix compile errors in omicOUT, update Makefile and .gitignore

This commit is copied from commit
706764e in Pull Request #3. That PR
does more than fixing issue #2, so I decided to split the other parts
off into separate commits.

- Add omicOUT to the Makefile.am
- Fix compiler error about the ifstream pointer check.
- Add some omitOUT related files to the Git ignore list.

Thanks for Albert Vernon Smith <[email protected]> for the fix!

Author: lckarssen

.gitignore

@@ -74,3 +74,8 @@
 /lib/
 /doc/*.aux
 /doc/auto/
+/OmicOUT/.deps/
+/OmicOUT/.deps/
+/OmicOUT/.dirstamp
+/OmicOUT/omicout-main.o
+/omicout

OmicOUT/main.cpp

@@ -235,21 +235,21 @@ int main(int argc, char *argv[] )
 
         ifstream fp_allResults;
         fp_allResults.open((source + ".dbin").c_str(),ios::in | ios::binary );
-        if(fp_allResults == 0)
+        if(!fp_allResults.is_open())
         {
             cout << "Error reading File "<< (source + ".dbin") << endl;
             exit(1);
         }
         ifstream fp_InfoResults;
         fp_InfoResults.open((source + ".ibin").c_str(),ios::in | ios::binary );
-        if(fp_InfoResults == 0)
+        if(!fp_InfoResults)
         {
             cout << "Error Creating File " << (source + ".ibin") << endl;
             exit(1);
         }
         ofstream fp_sigResults;
         fp_sigResults.open((dest + ".txt").c_str(),ios::out | ios::trunc);
-        if(fp_sigResults == 0)
+        if(!fp_sigResults)
         {
             cout << "Error Creating File "<< (dest + ".txt") << endl;
             exit(1);

src/Makefile.am

@@ -1,7 +1,7 @@
 # NOTE: This is not a recursive makefile. This file is to be included
 # in the top Makefile.am
 
-bin_PROGRAMS = omicabelnomm
+bin_PROGRAMS = omicabelnomm omicout
 
 oanomm_cpp = src/AIOwrapper.cpp src/Algorithm.cpp src/Utility.cpp
 oanomm_headers = $(oanomm_cpp:.cpp=.h) src/Definitions.h
@@ -11,3 +11,6 @@ omicabelnomm_CPPFLAGS = $(AM_CPPFLAGS)
 if USE_MPI
 omicabelnomm_CPPFLAGS += -DUSE_MPI
 endif
+
+omicout_SOURCES = OmicOUT/main.cpp
+omicout_CPPFLAGS = $(AM_CPPFLAGS)