Open
Description
Benchmark Failure: max_ndvi_composite
Scenario ID: max_ndvi_composite
Backend System: openeofed.dataspace.copernicus.eu
Failure Count: 1
Timestamp: 2025-05-19 06:57:30
Links:
- Workflow Run: https://github.com/ESA-APEx/apex_algorithms/actions/runs/15106294007
- Scenario Definition: https://github.com/ESA-APEx/apex_algorithms/blob/7b42386622e1a33965771d6bb9bdd883fb23d0db/algorithm_catalog/vito/max_ndvi_composite/benchmark_scenarios/max_ndvi_composite.json
- Artifacts: https://github.com/ESA-APEx/apex_algorithms/actions/runs/15106294007#artifacts
Contact Information
Point of Contact:
Name | Organization | Contact |
---|---|---|
Jeroen Dries | VITO | Contact via VITO (VITO Website, GitHub) |
Process Graph
{
"maxndvi1": {
"process_id": "max_ndvi_composite",
"namespace": "https://raw.githubusercontent.com/ESA-APEx/apex_algorithms/refs/heads/main/algorithm_catalog/vito/max_ndvi_composite/openeo_udp/max_ndvi_composite.json",
"arguments": {
"spatial_extent": {
"west": 5.07,
"east": 5.09,
"south": 51.21,
"north": 51.23
},
"temporal_extent": [
"2023-08-01",
"2023-09-30"
],
"bands": [
"B04"
]
},
"result": true
}
}
Error Logs
scenario = BenchmarkScenario(id='max_ndvi_composite', description='max_ndvi example', backend='openeofed.dataspace.copernicus.eu'...14544662950!tests_test_benchmarks.py__test_run_benchmark_max_ndvi_composite_!actual/openEO.tif'}, reference_options={})
connection_factory = <function connection_factory.<locals>.get_connection at 0x7f5f079a91c0>
tmp_path = PosixPath('/home/runner/work/apex_algorithms/apex_algorithms/qa/benchmarks/tmp_path_root/test_run_benchmark_max_ndvi_co0')
track_metric = <function track_metric.<locals>.append at 0x7f5f079a94e0>
upload_assets_on_fail = <function upload_assets_on_fail.<locals>.collect at 0x7f5f079a9260>
request = <FixtureRequest for <Function test_run_benchmark[max_ndvi_composite]>>
@pytest.mark.parametrize(
"scenario",
[
# Use scenario id as parameterization id to give nicer test names.
pytest.param(uc, id=uc.id)
for uc in get_benchmark_scenarios()
],
)
def test_run_benchmark(
scenario: BenchmarkScenario,
connection_factory,
tmp_path: Path,
track_metric,
upload_assets_on_fail,
request
):
track_metric("scenario_id", scenario.id)
# Check if a backend override has been provided via cli options.
override_backend = request.config.getoption("--override-backend")
backend_filter = request.config.getoption("--backend-filter")
if backend_filter and not re.match(backend_filter, scenario.backend):
#TODO apply filter during scenario retrieval, but seems to be hard to retrieve cli param
pytest.skip(f"skipping scenario {scenario.id} because backend {scenario.backend} does not match filter {backend_filter!r}")
backend = scenario.backend
if override_backend:
_log.info(f"Overriding backend URL with {override_backend!r}")
backend = override_backend
connection: openeo.Connection = connection_factory(url=backend)
# TODO #14 scenario option to use synchronous instead of batch job mode?
job = connection.create_job(
process_graph=scenario.process_graph,
title=f"APEx benchmark {scenario.id}",
additional=scenario.job_options,
)
track_metric("job_id", job.job_id)
# TODO: monitor timing and progress
# TODO: abort excessively long batch jobs? https://github.com/Open-EO/openeo-python-client/issues/589
job.start_and_wait()
collect_metrics_from_job_metadata(job, track_metric=track_metric)
results = job.get_results()
collect_metrics_from_results_metadata(results, track_metric=track_metric)
# Download actual results
actual_dir = tmp_path / "actual"
paths = results.download_files(target=actual_dir, include_stac_metadata=True)
# Upload assets on failure
upload_assets_on_fail(*paths)
# Compare actual results with reference data
reference_dir = download_reference_data(
scenario=scenario, reference_dir=tmp_path / "reference"
)
> assert_job_results_allclose(
actual=actual_dir,
expected=reference_dir,
tmp_path=tmp_path,
rtol=scenario.reference_options.get("rtol", 1e-6),
atol=scenario.reference_options.get("atol", 1e-6),
)
tests/test_benchmarks.py:79:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = PosixPath('/home/runner/work/apex_algorithms/apex_algorithms/qa/benchmarks/tmp_path_root/test_run_benchmark_max_ndvi_co0/actual')
expected = PosixPath('/home/runner/work/apex_algorithms/apex_algorithms/qa/benchmarks/tmp_path_root/test_run_benchmark_max_ndvi_co0/reference')
def assert_job_results_allclose(
actual: Union[BatchJob, JobResults, str, Path],
expected: Union[BatchJob, JobResults, str, Path],
*,
rtol: float = _DEFAULT_RTOL,
atol: float = _DEFAULT_ATOL,
tmp_path: Optional[Path] = None,
):
"""
Assert that two job results sets are equal (with tolerance).
:param actual: actual job results, provided as :py:class:`~openeo.rest.job.BatchJob` object,
:py:meth:`~openeo.rest.job.JobResults` object or path to directory with downloaded assets.
:param expected: expected job results, provided as :py:class:`~openeo.rest.job.BatchJob` object,
:py:meth:`~openeo.rest.job.JobResults` object or path to directory with downloaded assets.
:param rtol: relative tolerance
:param atol: absolute tolerance
:param tmp_path: root temp path to download results if needed.
It's recommended to pass pytest's `tmp_path` fixture here
:raises AssertionError: if not equal within the given tolerance
.. versionadded:: 0.31.0
.. warning::
This function is experimental and subject to change.
"""
issues = _compare_job_results(actual, expected, rtol=rtol, atol=atol, tmp_path=tmp_path)
if issues:
> raise AssertionError("\n".join(issues))
E AssertionError: Issues for metadata file 'job-results.json':
E Differing 'derived_from' links (12 common, 1 only in actual, 1 only in expected):
E only in actual: {'/eodata/Sentinel-2/MSI/L2A_N0500/2023/09/24/S2B_MSIL2A_20230924T103659_N0510_R008_T31UFS_20241101T040059.SAFE'}
E only in expected: {'/eodata/Sentinel-2/MSI/L2A/2023/09/24/S2B_MSIL2A_20230924T103659_N0509_R008_T31UFS_20230924T132849.SAFE'}.
E Issues for file 'openEO.tif':
E Left and right DataArray objects are not close
E Differing values:
E L
E array([[[ 885, 1118, ..., 388, 295],
E [2238, 2752, ..., 457, 229],
E ...,
E [ 187, 243, ..., 235, 283],
E [ 210, 212, ..., 221, 301]]], shape=(1, 227, 147), dtype=int16)
E R
E array([[[ 885, 1118, ..., 388, 295],
E [2238, 2752, ..., 457, 229],
E ...,
E [ 187, 243, ..., 235, 283],
E [ 210, 212, ..., 221, 301]]], shape=(1, 227, 147), dtype=int16)
E band 1: value difference exceeds tolerance (rtol 1e-06, atol 1e-06), min:1.0, max: 1568.0, mean: 97.77, var: 20333.7
E band 1: differing pixels: 3260/33369 (9.8%), bbox ((644525.0, 5675215.0), (645985.0, 5677475.0)) - 100.0% of the area
/opt/hostedtoolcache/Python/3.12.10/x64/lib/python3.12/site-packages/openeo/testing/results.py:488: AssertionError
----------------------------- Captured stdout call -----------------------------
0:00:00 Job 'cdse-j-250519065327406ab8a102992e2b5cfb': send 'start'
0:00:14 Job 'cdse-j-250519065327406ab8a102992e2b5cfb': created (progress 0%)
0:00:19 Job 'cdse-j-250519065327406ab8a102992e2b5cfb': created (progress 0%)
0:00:26 Job 'cdse-j-250519065327406ab8a102992e2b5cfb': created (progress 0%)
0:00:34 Job 'cdse-j-250519065327406ab8a102992e2b5cfb': created (progress 0%)
0:00:44 Job 'cdse-j-250519065327406ab8a102992e2b5cfb': running (progress N/A)
0:00:56 Job 'cdse-j-250519065327406ab8a102992e2b5cfb': running (progress N/A)
0:01:12 Job 'cdse-j-250519065327406ab8a102992e2b5cfb': running (progress N/A)
0:01:31 Job 'cdse-j-250519065327406ab8a102992e2b5cfb': running (progress N/A)
0:01:56 Job 'cdse-j-250519065327406ab8a102992e2b5cfb': running (progress N/A)
0:02:26 Job 'cdse-j-250519065327406ab8a102992e2b5cfb': running (progress N/A)
0:03:04 Job 'cdse-j-250519065327406ab8a102992e2b5cfb': running (progress N/A)
0:03:51 Job 'cdse-j-250519065327406ab8a102992e2b5cfb': finished (progress 100%)
------------------------------ Captured log call -------------------------------
INFO conftest:conftest.py:131 Connecting to 'openeofed.dataspace.copernicus.eu'
INFO openeo.config:config.py:193 Loaded openEO client config from sources: []
INFO conftest:conftest.py:144 Checking for auth_env_var='OPENEO_AUTH_CLIENT_CREDENTIALS_CDSEFED' to drive auth against url='openeofed.dataspace.copernicus.eu'.
INFO conftest:conftest.py:148 Extracted provider_id='CDSE' client_id='openeo-apex-benchmarks-service-account' from auth_env_var='OPENEO_AUTH_CLIENT_CREDENTIALS_CDSEFED'
INFO openeo.rest.connection:connection.py:232 Found OIDC providers: ['CDSE']
INFO openeo.rest.auth.oidc:oidc.py:404 Doing 'client_credentials' token request 'https://identity.dataspace.copernicus.eu/auth/realms/CDSE/protocol/openid-connect/token' with post data fields ['grant_type', 'client_id', 'client_secret', 'scope'] (client_id 'openeo-apex-benchmarks-service-account')
INFO openeo.rest.connection:connection.py:329 Obtained tokens: ['access_token', 'id_token']
INFO openeo.rest.job:job.py:401 Downloading Job result asset 'openEO.tif' from https://openeo.dataspace.copernicus.eu/openeo/1.1/jobs/j-250519065327406ab8a102992e2b5cfb/results/assets/NmE3N2ZjZDEtOWMwOC00NmU5LWI4NzUtNTRmYjk5OWFiMjAw/0dc683eb7c722b0a5e0de58dc8ca8cb9/openEO.tif?expires=1748242640 to /home/runner/work/apex_algorithms/apex_algorithms/qa/benchmarks/tmp_path_root/test_run_benchmark_max_ndvi_co0/actual/openEO.tif
INFO apex_algorithm_qa_tools.scenarios:util.py:346 Downloading reference data for scenario.id='max_ndvi_composite' to reference_dir=PosixPath('/home/runner/work/apex_algorithms/apex_algorithms/qa/benchmarks/tmp_path_root/test_run_benchmark_max_ndvi_co0/reference'): start 2025-05-19 06:57:22.207041
INFO apex_algorithm_qa_tools.scenarios:util.py:346 Downloading source='https://s3.waw3-1.cloudferro.com/apex-benchmarks/gh-14544662950!tests_test_benchmarks.py__test_run_benchmark_max_ndvi_composite_!actual/job-results.json' to path=PosixPath('/home/runner/work/apex_algorithms/apex_algorithms/qa/benchmarks/tmp_path_root/test_run_benchmark_max_ndvi_co0/reference/job-results.json'): start 2025-05-19 06:57:22.207363
INFO apex_algorithm_qa_tools.scenarios:util.py:352 Downloading source='https://s3.waw3-1.cloudferro.com/apex-benchmarks/gh-14544662950!tests_test_benchmarks.py__test_run_benchmark_max_ndvi_composite_!actual/job-results.json' to path=PosixPath('/home/runner/work/apex_algorithms/apex_algorithms/qa/benchmarks/tmp_path_root/test_run_benchmark_max_ndvi_co0/reference/job-results.json'): end 2025-05-19 06:57:22.896074, elapsed 0:00:00.688711
INFO apex_algorithm_qa_tools.scenarios:util.py:346 Downloading source='https://s3.waw3-1.cloudferro.com/apex-benchmarks/gh-14544662950!tests_test_benchmarks.py__test_run_benchmark_max_ndvi_composite_!actual/openEO.tif' to path=PosixPath('/home/runner/work/apex_algorithms/apex_algorithms/qa/benchmarks/tmp_path_root/test_run_benchmark_max_ndvi_co0/reference/openEO.tif'): start 2025-05-19 06:57:22.896408
INFO apex_algorithm_qa_tools.scenarios:util.py:352 Downloading source='https://s3.waw3-1.cloudferro.com/apex-benchmarks/gh-14544662950!tests_test_benchmarks.py__test_run_benchmark_max_ndvi_composite_!actual/openEO.tif' to path=PosixPath('/home/runner/work/apex_algorithms/apex_algorithms/qa/benchmarks/tmp_path_root/test_run_benchmark_max_ndvi_co0/reference/openEO.tif'): end 2025-05-19 06:57:23.740332, elapsed 0:00:00.843924
INFO apex_algorithm_qa_tools.scenarios:util.py:352 Downloading reference data for scenario.id='max_ndvi_composite' to reference_dir=PosixPath('/home/runner/work/apex_algorithms/apex_algorithms/qa/benchmarks/tmp_path_root/test_run_benchmark_max_ndvi_co0/reference'): end 2025-05-19 06:57:23.740514, elapsed 0:00:01.533473
INFO openeo.testing.results:results.py:400 Comparing job results: PosixPath('/home/runner/work/apex_algorithms/apex_algorithms/qa/benchmarks/tmp_path_root/test_run_benchmark_max_ndvi_co0/actual') vs PosixPath('/home/runner/work/apex_algorithms/apex_algorithms/qa/benchmarks/tmp_path_root/test_run_benchmark_max_ndvi_co0/reference')
WARNING openeo.testing.results:results.py:169 Difference (ascii art) for band 1:
┌──────────────────────────────────────────────────────────────────────────┐
│W n d '"., d,^^,^.'...''...`'.......`. ^`^^```,│
│ 'z' 1 ? " ... ^'`^'....'`.'." "... ..'│
│ ..... ..... '`.^'.''''`^"",^,"` '.''..`│
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│ >,":,`'"",;;:^'!!l}?^: `'^`│
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│`^:`I .. '...... . ''. .. ..... ...'.'`_>!! │
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└──────────────────────────────────────────────────────────────────────────┘