tsv-gz header info to be cleared

[karl-koschutnig]

Hi Marcel,

I hope you’re doing well!

I have a quick question. We use physio-files acquired with CMRR and convert them using your bidscoiner. That works really well, but we encountered a minor issue with the tsv.gz header (warning in bids-validator)

We discovered that in this specific header (not for instance in nii.gz), there’s information about the acquisition date (or better, zip-date) and the name of the sequence is also present in the gz-header.

We’ve already made a quick fix, but it would be more efficient to directly handle this in your pipeline.

Here’s the relevant file:
https://github.com/MRI-Lab-Graz/Nextflow-dcm-converter

The file is called TSV_HeaderCleaner_v2.py.

Best, Karl

[marcelzwiers]

Hi Karl,
A little busy with a new project, so sorry for this late reply. Hope you are well too. I wanted to take a look, but if I follow the link to the relevant file, I get a 404 error....
I'll be happy to take your fix :-)
Cheers,
Marcel