Separate summarise-herg-qc script command line parsing #24
Workflow file for this run
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| name: Tests | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| types: [opened, synchronize, reopened, ready_for_review] | |
| branches: | |
| - '**' | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| if: github.event.pull_request.draft == false | |
| env: | |
| python-latest: 3.14 | |
| strategy: | |
| matrix: | |
| python-version: ['3.10', 3.11, 3.12, 3.13, 3.14] | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install -e .[test] | |
| - name: Check code style with flake8 | |
| if: ${{ matrix.python-version == env.python-latest }} | |
| run: | | |
| python -m flake8 pcpostprocess/*.py tests/*.py pcpostprocess/scripts/*.py | |
| - name: Check import ordering with isort | |
| if: ${{ matrix.python-version == env.python-latest }} | |
| run: | | |
| python -m isort --verbose --check-only --diff pcpostprocess tests setup.py | |
| - name: Extract test data | |
| run: | | |
| wget https://cardiac.nottingham.ac.uk/syncropatch_export/test_data.tar.xz -P tests/ | |
| tar xvf tests/test_data.tar.xz -C tests/ | |
| - name: Run unit tests (without coverage testing) | |
| if: ${{ success() && matrix.python-version != env.python-latest }} | |
| run: python -m unittest | |
| - name: Run unit tests (with coverage testing) | |
| if: ${{ success() && matrix.python-version == env.python-latest }} | |
| run: coverage run -m unittest | |
| - name: Install TeX dependencies for run_herg_qc test | |
| timeout-minutes: 15 | |
| run: sudo apt-get install dvipng texlive-latex-extra texlive-fonts-recommended cm-super -y | |
| - name: Run `run_herg_qc` script | |
| timeout-minutes: 15 | |
| run: pcpostprocess run_herg_qc tests/test_data/13112023_MW2_FF -w A01 A02 A03 | |
| - name: Report coverage to codecov | |
| uses: codecov/codecov-action@v4 | |
| if: ${{ success() && matrix.python-version == env.python-latest }} | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |