Fix QC bug #372
Workflow file for this run
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| name: build | |
| on: [push] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| if: github.event.pull_request.draft == false | |
| strategy: | |
| matrix: | |
| python-version: ['3.10', 3.11, 3.12, 3.13, 3.14] | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install -e .[test] | |
| - name: Lint with flake8 | |
| run: | | |
| python -m flake8 pcpostprocess/*.py tests/*.py pcpostprocess/scripts/*.py | |
| - name: Import sorting with isort | |
| run: | | |
| python -m isort --verbose --check-only --diff pcpostprocess tests setup.py | |
| - name: Extract test data | |
| run: | | |
| wget https://cardiac.nottingham.ac.uk/syncropatch_export/test_data.tar.xz -P tests/ | |
| tar xvf tests/test_data.tar.xz -C tests/ | |
| - name: Test with pytest | |
| run: | | |
| python -m pip install -e . | |
| python -m pytest --cov --cov-config=.coveragerc | |
| - name: Install TeX dependencies | |
| timeout-minutes: 15 | |
| run: | | |
| sudo apt-get install dvipng texlive-latex-extra texlive-fonts-recommended cm-super -y | |
| - name: Test running QC | |
| timeout-minutes: 15 | |
| run: | | |
| pcpostprocess run_herg_qc tests/test_data/13112023_MW2_FF -w A01 A02 A03 | |
| - uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} # not required for public repos | |
| if: success() && matrix.python-version == 3.14 | |