get_velocity

[sidrahmaryam]

Hello,
I am trying to use get_velocity_function,
But I am getting this error, however the files are being made..

Writing outputs
Error in .Call2("write_XStringSet_to_fasta", x, filexp_list, width, lkup, :
write error

Please help, or suggest what might have gone wrong.

I used this function line:

get_velocity_files(edb, L = 91, Genome = BSgenome.Mmusculus.UCSC.mm10, 
                   out_path = "/home/sidrah19220/velocity_file/new", 
                   isoform_action = "separate")

(P.S-Sorry, the issue got published earlier, before I could explain. )

[lambdamoses]

Would you please describe the problem?

[lambdamoses]

Sorry for the late reply; I did not get a notification that you added the explanations. It seems that this error comes from Biostrings. Do you have trouble writing Biostrings DNAStringSet in general? Also, which version of BUSpaRse are you using? There have been some changes for Bioc 3.11.