From 4899ccd579480380494bcbe7220d7087a4ce18df Mon Sep 17 00:00:00 2001 From: toloudis Date: Thu, 10 Sep 2026 13:50:50 -0700 Subject: [PATCH] remove allen-cell-animated --- .github/CODEOWNERS | 2 +- CMakeLists.txt | 2 +- INSTALL.md | 2 +- README.md | 2 +- agave_app/aboutDialog.cpp | 2 +- agave_app/agaveGui.cpp | 6 +++--- agave_app/citationDialog.cpp | 2 +- agave_pyclient/README.md | 2 +- agave_pyclient/pyproject.toml | 2 +- docs/agave.rst | 8 ++++---- webclient/package.json | 2 +- 11 files changed, 16 insertions(+), 16 deletions(-) diff --git a/.github/CODEOWNERS b/.github/CODEOWNERS index b30f838ba..442a7ebca 100644 --- a/.github/CODEOWNERS +++ b/.github/CODEOWNERS @@ -1,4 +1,4 @@ # These owners will be the default owners for everything in # the repo. Unless a later match takes precedence, they will # be requested for review when someone opens a pull request. -* @allen-cell-animated/core-devs +* @AllenCell/simviz-team diff --git a/CMakeLists.txt b/CMakeLists.txt index 0fd8c245c..2fa2094ca 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -224,7 +224,7 @@ if(WIN32) set(CPACK_NSIS_MUI_ICON "${CMAKE_SOURCE_DIR}/agave_app/icons/logo.ico") set(CPACK_NSIS_MUI_UNIICON "${CMAKE_SOURCE_DIR}/agave_app/icons/logo.ico") set(CPACK_NSIS_EXECUTABLES_DIRECTORY "agave-install") - set(CPACK_NSIS_MENU_LINKS "https://allen-cell-animated.github.io/agave" "AGAVE Docs") + set(CPACK_NSIS_MENU_LINKS "https://allencell.github.io/agave" "AGAVE Docs") set(CPACK_NSIS_PACKAGE_NAME "AGAVE ${PROJECT_VERSION_MAJOR}.${PROJECT_VERSION_MINOR}.${PROJECT_VERSION_PATCH}") set(CPACK_NSIS_EXTRA_INSTALL_COMMANDS " WriteRegStr HKCR 'agave' '' 'URL:agave' diff --git a/INSTALL.md b/INSTALL.md index 7fd8928de..11b17654a 100644 --- a/INSTALL.md +++ b/INSTALL.md @@ -1,6 +1,6 @@ # Installation Instructions -You can access the [latest installer release here](https://github.com/allen-cell-animated/agave/tags). +You can access the [latest installer release here](https://github.com/AllenCell/agave/tags). ## Windows diff --git a/README.md b/README.md index 015c78c8a..5e2428f4d 100644 --- a/README.md +++ b/README.md @@ -58,7 +58,7 @@ cd build cmake -DCMAKE_TOOLCHAIN_FILE=D:\vcpkg\scripts\buildsystems\vcpkg.cmake -G "Visual Studio 17 2022" -A x64 -DVCPKG_TARGET_TRIPLET=x64-windows .. # or, example: ninja in separate build dir! -cmake -DCMAKE_TOOLCHAIN_FILE=C:\Users\%USERNAME%\source\repos\vcpkg\scripts\buildsystems\vcpkg.cmake -G "Ninja Multi-Config" -DVCPKG_TARGET_TRIPLET=x64-windows C:\Users\%USERNAME%\source\repos\allen-cell-animated\agave +cmake -DCMAKE_TOOLCHAIN_FILE=C:\Users\%USERNAME%\source\repos\vcpkg\scripts\buildsystems\vcpkg.cmake -G "Ninja Multi-Config" -DVCPKG_TARGET_TRIPLET=x64-windows C:\Users\%USERNAME%\source\repos\AllenCell\agave cmake --build . --target install ``` diff --git a/agave_app/aboutDialog.cpp b/agave_app/aboutDialog.cpp index c4a76b612..7d79b22a6 100644 --- a/agave_app/aboutDialog.cpp +++ b/agave_app/aboutDialog.cpp @@ -20,7 +20,7 @@ AboutDialog::AboutDialog() label->setAlignment(Qt::AlignCenter); layout->addWidget(label); - QString agaveUrl = "https://github.com/allen-cell-animated/agave"; + QString agaveUrl = "https://github.com/AllenCell/agave"; auto text = new QLabel(this); text->setText( diff --git a/agave_app/agaveGui.cpp b/agave_app/agaveGui.cpp index 71bbbd8b1..400116abe 100644 --- a/agave_app/agaveGui.cpp +++ b/agave_app/agaveGui.cpp @@ -563,17 +563,17 @@ agaveGui::onSupportForumAction() void agaveGui::onDocumentationAction() { - QDesktopServices::openUrl(QUrl("https://allen-cell-animated.github.io/agave")); + QDesktopServices::openUrl(QUrl("https://allencell.github.io/agave")); } void agaveGui::onReportBugAction() { - QDesktopServices::openUrl(QUrl("https://github.com/allen-cell-animated/agave/issues")); + QDesktopServices::openUrl(QUrl("https://github.com/AllenCell/agave/issues")); } void agaveGui::onSourceCodeAction() { - QDesktopServices::openUrl(QUrl("https://github.com/allen-cell-animated/agave")); + QDesktopServices::openUrl(QUrl("https://github.com/AllenCell/agave")); } void agaveGui::onCitationAction() diff --git a/agave_app/citationDialog.cpp b/agave_app/citationDialog.cpp index 936cd8933..4e8de68a0 100644 --- a/agave_app/citationDialog.cpp +++ b/agave_app/citationDialog.cpp @@ -17,7 +17,7 @@ CitationDialog::CitationDialog() label->setText("If you use AGAVE in your research, please cite the following:"); layout->addWidget(label); - QString agaveUrl = "https://github.com/allen-cell-animated/agave"; + QString agaveUrl = "https://github.com/AllenCell/agave"; int year = QDate::currentDate().year(); QString syear = QString::number(year); diff --git a/agave_pyclient/README.md b/agave_pyclient/README.md index a7b48c5a5..082a994e4 100644 --- a/agave_pyclient/README.md +++ b/agave_pyclient/README.md @@ -50,7 +50,7 @@ r.redraw() ## Documentation -For full package documentation please visit [allen-cell-animated.github.io/agave](https://allen-cell-animated.github.io/agave). +For full package documentation please visit [allencell.github.io/agave](https://allencell.github.io/agave). ## Development diff --git a/agave_pyclient/pyproject.toml b/agave_pyclient/pyproject.toml index e3e41397b..8cb3a43e6 100644 --- a/agave_pyclient/pyproject.toml +++ b/agave_pyclient/pyproject.toml @@ -38,7 +38,7 @@ dependencies = [ ] [project.urls] -Homepage = "https://github.com/allen-cell-animated/agave" +Homepage = "https://github.com/AllenCell/agave" [project.optional-dependencies] test = [ diff --git a/docs/agave.rst b/docs/agave.rst index 94bbf1f85..045eb7cba 100644 --- a/docs/agave.rst +++ b/docs/agave.rst @@ -752,7 +752,7 @@ First, install the AGAVE Python client: The Python client will then find a running AGAVE server session and send commands to it. The ``AgaveRenderer`` will automatically launch a local AGAVE server for you if it cannot find one already running (see the -`agave_pyclient documentation `__ +`agave_pyclient documentation `__ for the ``auto_launch`` and ``agave_path`` options). @@ -772,7 +772,7 @@ The AGAVE Python client provides commands for every setting in the user interface, and also provides two additional convenience commands for creating an image sequence for a turntable rotation, and for a rocker (side to side) rotation. For Python users, the AGAVE Python client project full documentation can be found here: -https://allen-cell-animated.github.io/agave/agave_pyclient +https://allencell.github.io/agave/agave_pyclient Command Line Interface @@ -815,7 +815,7 @@ Citation .. |year| date:: %Y -Daniel Toloudis, AGAVE Contributors (|year|). AGAVE: Advanced GPU Accelerated Volume Explorer (Version |release|) [Computer software]. Allen Institute, Cell Science. https://github.com/allen-cell-animated/agave +Daniel Toloudis, AGAVE Contributors (|year|). AGAVE: Advanced GPU Accelerated Volume Explorer (Version |release|) [Computer software]. Allen Institute, Cell Science. https://github.com/AllenCell/agave bibtex: @@ -826,7 +826,7 @@ bibtex: title = {AGAVE: Advanced GPU Accelerated Volume Explorer}, year = {|year|}, version = {|release|}, - url = {https://github.com/allen-cell-animated/agave}, + url = {https://github.com/AllenCell/agave}, organization = {Allen Institute, Cell Science}, note = {Computer Software} } diff --git a/webclient/package.json b/webclient/package.json index 7de09b415..96f937b82 100644 --- a/webclient/package.json +++ b/webclient/package.json @@ -14,7 +14,7 @@ }, "repository": { "type": "git", - "url": "git+https://github.com/allen-cell-animated/agave.git" + "url": "git+https://github.com/AllenCell/agave.git" }, "scripts": { "prepare": "npm run build",