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validator.py
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503 lines (446 loc) · 19.3 KB
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#!/usr/bin/env python3
"""
Execution Environment Validator
This module provides comprehensive validation of the execution environment
to ensure safe and reliable execution of GNN pipeline simulations.
"""
import platform
import subprocess # nosec B404 -- subprocess calls with controlled/trusted input
import sys
# psutil is optional; fall back gracefully if unavailable
try:
import psutil # type: ignore
_PSUTIL_AVAILABLE = True
except Exception:
psutil = None # type: ignore
_PSUTIL_AVAILABLE = False
import logging
from dataclasses import dataclass, field
from datetime import datetime
from pathlib import Path
from typing import Any, Dict, List, Optional
@dataclass
class ValidationResult:
"""Results of environment validation."""
component: str
status: str # "pass", "warn", "fail"
message: str
details: Dict[str, Any] = field(default_factory=dict)
suggestion: Optional[str] = None
@dataclass
class EnvironmentValidation:
"""Complete environment validation results."""
timestamp: datetime
overall_status: str # "healthy", "degraded", "failed"
results: List[ValidationResult] = field(default_factory=list)
summary: Dict[str, int] = field(default_factory=dict)
def add_result(self, result: ValidationResult):
"""Add a validation result."""
self.results.append(result)
self.summary[result.status] = self.summary.get(result.status, 0) + 1
def get_failed_components(self) -> List[str]:
"""Get list of failed components."""
return [r.component for r in self.results if r.status == "fail"]
def get_warnings(self) -> List[str]:
"""Get list of components with warnings."""
return [r.component for r in self.results if r.status == "warn"]
def check_python_environment() -> ValidationResult:
"""Validate Python environment and version."""
try:
version = sys.version_info
if version.major < 3 or (version.major == 3 and version.minor < 8):
return ValidationResult(
component="python_version",
status="fail",
message=f"Python {version.major}.{version.minor} is too old",
details={"version": f"{version.major}.{version.minor}.{version.micro}"},
suggestion="Upgrade to Python 3.8 or later"
)
elif version.minor < 9:
return ValidationResult(
component="python_version",
status="warn",
message=f"Python {version.major}.{version.minor} is supported but not optimal",
details={"version": f"{version.major}.{version.minor}.{version.micro}"},
suggestion="Consider upgrading to Python 3.9+ for better performance"
)
else:
return ValidationResult(
component="python_version",
status="pass",
message=f"Python {version.major}.{version.minor} is supported",
details={"version": f"{version.major}.{version.minor}.{version.micro}"}
)
except Exception as e:
return ValidationResult(
component="python_version",
status="fail",
message=f"Failed to check Python version: {e}",
suggestion="Verify Python installation"
)
def check_system_resources() -> List[ValidationResult]:
"""Validate system resources (memory, disk, CPU)."""
results = []
try:
# Memory check (only if psutil available)
if _PSUTIL_AVAILABLE:
memory = psutil.virtual_memory()
memory_gb = memory.total / (1024 ** 3)
if memory_gb < 2:
results.append(ValidationResult(
component="memory",
status="fail",
message=f"Insufficient memory: {memory_gb:.1f}GB available",
details={"total_gb": memory_gb, "available_gb": memory.available / (1024 ** 3)},
suggestion="Increase system memory to at least 4GB"
))
elif memory_gb < 4:
results.append(ValidationResult(
component="memory",
status="warn",
message=f"Low memory: {memory_gb:.1f}GB available",
details={"total_gb": memory_gb, "available_gb": memory.available / (1024 ** 3)},
suggestion="Consider increasing memory for better performance"
))
else:
results.append(ValidationResult(
component="memory",
status="pass",
message=f"Sufficient memory: {memory_gb:.1f}GB available",
details={"total_gb": memory_gb, "available_gb": memory.available / (1024 ** 3)}
))
else:
results.append(ValidationResult(
component="memory",
status="warn",
message="psutil not available; memory check skipped",
suggestion="Install psutil for detailed resource checks (uv pip install psutil)"
))
# Disk space check (recovery to shutil if psutil unavailable)
try:
if _PSUTIL_AVAILABLE:
disk = psutil.disk_usage('/')
total = disk.total
free = disk.free
else:
import shutil as _shutil
usage = _shutil.disk_usage('/')
total = usage.total
free = usage.free
disk_free_gb = free / (1024 ** 3)
if disk_free_gb < 1:
results.append(ValidationResult(
component="disk_space",
status="fail",
message=f"Insufficient disk space: {disk_free_gb:.1f}GB free",
details={"free_gb": disk_free_gb, "total_gb": total / (1024 ** 3)},
suggestion="Free up at least 2GB of disk space"
))
elif disk_free_gb < 5:
results.append(ValidationResult(
component="disk_space",
status="warn",
message=f"Low disk space: {disk_free_gb:.1f}GB free",
details={"free_gb": disk_free_gb, "total_gb": total / (1024 ** 3)},
suggestion="Consider freeing up more disk space"
))
else:
results.append(ValidationResult(
component="disk_space",
status="pass",
message=f"Sufficient disk space: {disk_free_gb:.1f}GB free",
details={"free_gb": disk_free_gb, "total_gb": total / (1024 ** 3)}
))
except Exception as disk_e:
results.append(ValidationResult(
component="disk_space",
status="warn",
message=f"Failed to determine disk space: {disk_e}",
suggestion="Ensure disk usage tools are available"
))
# CPU check (only if psutil available)
if _PSUTIL_AVAILABLE:
cpu_count = psutil.cpu_count(logical=False)
cpu_percent = psutil.cpu_percent(interval=1)
if cpu_percent > 90:
results.append(ValidationResult(
component="cpu_usage",
status="warn",
message=f"High CPU usage: {cpu_percent}%",
details={"cpu_count": cpu_count, "cpu_percent": cpu_percent},
suggestion="Wait for CPU usage to decrease before running intensive tasks"
))
else:
results.append(ValidationResult(
component="cpu_usage",
status="pass",
message=f"Normal CPU usage: {cpu_percent}%",
details={"cpu_count": cpu_count, "cpu_percent": cpu_percent}
))
else:
results.append(ValidationResult(
component="cpu_usage",
status="warn",
message="psutil not available; CPU usage check skipped",
suggestion="Install psutil for CPU metrics (uv pip install psutil)"
))
except Exception as e:
results.append(ValidationResult(
component="system_resources",
status="fail",
message=f"Failed to check system resources: {e}",
suggestion="Verify system monitoring tools are available"
))
return results
def check_dependencies() -> List[ValidationResult]:
"""Check for required Python packages."""
results = []
required_packages = [
("numpy", "1.19.0"),
("matplotlib", "3.3.0"),
("networkx", "2.5"),
("pandas", "1.1.0"),
("pyyaml", "5.4.0"),
("scipy", "1.5.0"),
("scikit-learn", "0.24.0")
]
# Optional execution-time dependencies (do not fail overall if missing)
optional_packages = [
("pymdp", "0.0.8")
]
for package, min_version in required_packages:
try:
# Try to import the package
if package == "pyyaml":
# Special case: pyyaml installs as 'yaml' module
import yaml
module = yaml
elif package == "scikit-learn":
# Special case: scikit-learn installs as 'sklearn' module
import sklearn
module = sklearn
else:
module = __import__(package)
# Try to get version
try:
version = getattr(module, '__version__', 'unknown')
results.append(ValidationResult(
component=f"dependency_{package}",
status="pass",
message=f"{package} {version} is available",
details={"package": package, "version": version, "min_version": min_version}
))
except Exception:
results.append(ValidationResult(
component=f"dependency_{package}",
status="warn",
message=f"{package} is available but version unknown",
details={"package": package, "min_version": min_version},
suggestion=f"Verify {package} version meets minimum requirement"
))
except ImportError:
results.append(ValidationResult(
component=f"dependency_{package}",
status="fail",
message=f"{package} is not available",
details={"package": package, "min_version": min_version},
suggestion=f"Install {package}>={min_version} with: uv pip install {package}>={min_version} or add to pyproject and run uv sync"
))
# Check optional packages as warnings
for package, min_version in optional_packages:
try:
module = __import__(package)
version = getattr(module, '__version__', 'unknown')
results.append(ValidationResult(
component=f"dependency_optional_{package}",
status="pass",
message=f"{package} {version} is available",
details={"package": package, "version": version, "min_version": min_version}
))
except ImportError:
results.append(ValidationResult(
component=f"dependency_optional_{package}",
status="warn",
message=f"Optional dependency {package} is not available; some executions may be skipped",
details={"package": package, "min_version": min_version},
suggestion=f"Install {package}>={min_version} with: uv pip install {package}>={min_version}"
))
return results
def check_file_permissions() -> List[ValidationResult]:
"""Check file system permissions for execution."""
results = []
try:
# Check write permissions in current directory
test_file = Path("test_write_permission.tmp")
try:
with open(test_file, 'w') as f:
f.write("test")
test_file.unlink()
results.append(ValidationResult(
component="write_permissions",
status="pass",
message="Write permissions verified",
details={"location": str(Path.cwd())}
))
except Exception as e:
results.append(ValidationResult(
component="write_permissions",
status="fail",
message=f"Cannot write to current directory: {e}",
details={"location": str(Path.cwd())},
suggestion="Ensure write permissions in working directory"
))
# Check execution permissions
if platform.system() != "Windows":
# On Unix-like systems, check if we can execute files
try:
result = subprocess.run(["echo", "test"], capture_output=True, text=True, timeout=5) # nosec B607 B603 -- subprocess calls with controlled/trusted input
if result.returncode == 0:
results.append(ValidationResult(
component="execute_permissions",
status="pass",
message="Execute permissions verified"
))
else:
results.append(ValidationResult(
component="execute_permissions",
status="warn",
message="Execute permissions may be limited",
suggestion="Verify script execution permissions"
))
except Exception as e:
results.append(ValidationResult(
component="execute_permissions",
status="warn",
message=f"Cannot verify execute permissions: {e}",
suggestion="Manually verify script execution permissions"
))
except Exception as e:
results.append(ValidationResult(
component="file_permissions",
status="fail",
message=f"Failed to check file permissions: {e}",
suggestion="Verify file system access and permissions"
))
return results
def check_network_connectivity() -> ValidationResult:
"""Check basic network connectivity (optional)."""
try:
# Try to resolve DNS
import socket
socket.gethostbyname("google.com")
return ValidationResult(
component="network_connectivity",
status="pass",
message="Network connectivity verified"
)
except Exception as e:
return ValidationResult(
component="network_connectivity",
status="warn",
message=f"Network connectivity limited: {e}",
suggestion="Some features requiring network access may not work"
)
def validate_execution_environment() -> Dict[str, Any]:
"""Perform comprehensive execution environment validation."""
validation = EnvironmentValidation(
timestamp=datetime.now(),
overall_status="healthy"
)
# Run all validation checks
validation.add_result(check_python_environment())
for result in check_system_resources():
validation.add_result(result)
for result in check_dependencies():
validation.add_result(result)
for result in check_file_permissions():
validation.add_result(result)
validation.add_result(check_network_connectivity())
# Calculate summary
validation.summary = {
"total_checks": len(validation.results),
"total_passed": len([r for r in validation.results if r.status == "pass"]),
"total_warnings": len([r for r in validation.results if r.status == "warn"]),
"total_errors": len([r for r in validation.results if r.status == "fail"])
}
# Determine overall status
if validation.summary["total_errors"] > 0:
validation.overall_status = "failed"
elif validation.summary["total_warnings"] > 0:
validation.overall_status = "degraded"
else:
validation.overall_status = "healthy"
# Build the results list
results_list = [
{
"component": r.component,
"status": r.status,
"message": r.message,
"details": r.details,
"suggestion": r.suggestion
}
for r in validation.results
]
# Extract convenience top-level keys expected by tests and callers
python_version_details: Dict[str, Any] = {}
dependencies: Dict[str, Any] = {}
for r in validation.results:
if r.component == "python_version":
python_version_details = {
"version": r.details.get("version", "unknown"),
"status": r.status,
"message": r.message,
}
elif r.component.startswith("dependency_"):
dep_name = r.component.replace("dependency_optional_", "").replace("dependency_", "")
dependencies[dep_name] = {
"status": r.status,
"message": r.message,
"details": r.details,
}
# Convert to dict for JSON serialization
return {
"timestamp": validation.timestamp.isoformat(),
"overall_status": validation.overall_status,
"summary": validation.summary,
"results": results_list,
# Convenience top-level keys (used by tests and callers)
"python_version": python_version_details,
"dependencies": dependencies,
}
def log_validation_results(validation_results: Dict[str, Any], logger: logging.Logger):
"""Log validation results in a structured format."""
logger.info(f"Environment validation completed: {validation_results['overall_status']}")
summary = validation_results["summary"]
logger.info(f"Validation summary: {summary['total_passed']} passed, "
f"{summary['total_warnings']} warnings, {summary['total_errors']} errors")
# Log failures first
for result in validation_results["results"]:
if result["status"] == "fail":
logger.error(f"❌ {result['component']}: {result['message']}")
if result.get("suggestion"):
logger.error(f" 💡 Suggestion: {result['suggestion']}")
# Log warnings
for result in validation_results["results"]:
if result["status"] == "warn":
logger.warning(f"⚠️ {result['component']}: {result['message']}")
if result.get("suggestion"):
logger.warning(f" 💡 Suggestion: {result['suggestion']}")
# Log successes (debug level)
passed_count = 0
for result in validation_results["results"]:
if result["status"] == "pass":
passed_count += 1
logger.debug(f"✅ {result['component']}: {result['message']}")
if passed_count > 0:
logger.info(f"✅ {passed_count} components passed validation")
if __name__ == "__main__":
# Standalone validation for testing
results = validate_execution_environment()
print(f"Environment Status: {results['overall_status']}")
print(f"Summary: {results['summary']}")
for result in results["results"]:
status_emoji = {"pass": "✅", "warn": "⚠️", "fail": "❌"}[result["status"]]
print(f"{status_emoji} {result['component']}: {result['message']}")
if result.get("suggestion"):
print(f" 💡 {result['suggestion']}")